View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1153_low_54 (Length: 275)
Name: NF1153_low_54
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_54 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 46517943 - 46517688
Alignment:
| Q |
13 |
gtatgtggtaacaaaaattaacaaagtaatcattttgttctaatttgactcagccaagaaaattgttgatttgatataattttagcttgtgatgggatga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46517943 |
gtatgtggtaacaaaaattaacaaagtaatcattttgttctaatttgactcagccaagaaaattgttgatttgatataattttagcttgtgatgggatga |
46517844 |
T |
|
| Q |
113 |
atcagtccgctaattaacccaataatttcttttatttaaaaatatcaataatataattacatagatattcgtcatcgtgaccatattcagttggtaaaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46517843 |
atcagtccgctaattaacccaataatttcttttatttaaaaatatcaataatataattacatagatattcgtcatcgtgaccatattcagttggtaaaga |
46517744 |
T |
|
| Q |
213 |
catcgcattatatttgagtggccagtattattttttagggttaaatatatttttgg |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46517743 |
catcgcattatatttgagtggccagtattattttttagggttaaatatatttttgg |
46517688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University