View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1153_low_6 (Length: 482)

Name: NF1153_low_6
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1153_low_6
NF1153_low_6
[»] chr4 (1 HSPs)
chr4 (38-411)||(18095863-18096236)
[»] chr2 (3 HSPs)
chr2 (38-411)||(37853469-37853842)
chr2 (298-408)||(21088599-21088709)
chr2 (124-186)||(21551063-21551125)
[»] scaffold0008 (2 HSPs)
scaffold0008 (298-407)||(64757-64866)
scaffold0008 (317-407)||(52354-52444)
[»] chr3 (2 HSPs)
chr3 (147-201)||(24182299-24182353)
chr3 (141-185)||(41214855-41214899)
[»] chr1 (1 HSPs)
chr1 (317-407)||(31523134-31523224)
[»] chr6 (3 HSPs)
chr6 (122-162)||(3678447-3678487)
chr6 (126-162)||(20239260-20239296)
chr6 (126-162)||(22133244-22133280)
[»] chr5 (3 HSPs)
chr5 (147-193)||(11744227-11744273)
chr5 (123-188)||(28811985-28812050)
chr5 (146-186)||(4239526-4239566)
[»] chr7 (1 HSPs)
chr7 (148-193)||(3530281-3530326)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 38 - 411
Target Start/End: Complemental strand, 18096236 - 18095863
Alignment:
Q  38 gtgatccagttctccggaaaacgagtcccgataatctagagttcaatcggaaagtaagtaaaatttggctaaaaattgtttagctcagaaatcaaactca 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||    
T  18096236 gtgatccagttctccggaaaacgagtcccgataatctagagttcaatcggaaagtaagtaaagtttggctaaaaattgtttcgctcagaaatcaaattca 18096137  T
Q  138 aattcttttgaacaatttgtcatttagtggaattcattaaccacttgagtcaaattctttggtttgtaacatttttagaataaaagtctggtaatctaga 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||| |||||||||||||||    
T  18096136 aattcttttgaacaatttgtcatttagtggaattcattaaccacttgagtcaaattccttggtttataaattttttagaataaatgtctggtaatctaga 18096037  T
Q  238 attcgatcaagaagtaagtaaagtctggtcaagaattgttcctctcataaattaattacataccggaaataagtaaatgtagtaatcttctattgtgagc 337  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18096036 attcgttcaagaagtaagtaaagtttggtcaagaattgttcctctcataaattaattacataccggaaataagtaaatgtagtaatcttctattgtgagc 18095937  T
Q  338 atactgctccaagagaaaagacatccattgccaagaaggaagcataccaatattgcagcatattttccctatga 411  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18095936 atactgttccaagagaaaagacatccattgccaagaaggaagcataccaatattgcagcatattttccctatga 18095863  T

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Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 38 - 411
Target Start/End: Complemental strand, 37853842 - 37853469
Alignment:
Q  38 gtgatccagttctccggaaaacgagtcccgataatctagagttcaatcggaaagtaagtaaaatttggctaaaaattgtttagctcagaaatcaaactca 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||    
T  37853842 gtgatccagttctccggaaaacgagtcccgataatctagagttcaatcggaaagtaagtaaagtttggctaaaaattgtttcgctcagaaatcaaattca 37853743  T
Q  138 aattcttttgaacaatttgtcatttagtggaattcattaaccacttgagtcaaattctttggtttgtaacatttttagaataaaagtctggtaatctaga 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||| |||||||||||||||    
T  37853742 aattcttttgaacaatttgtcatttagtggaattcattaaccacttgagtcaaattccttggtttataaattttttagaataaatgtctggtaatctaga 37853643  T
Q  238 attcgatcaagaagtaagtaaagtctggtcaagaattgttcctctcataaattaattacataccggaaataagtaaatgtagtaatcttctattgtgagc 337  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37853642 attcgttcaagaagtaagtaaagtttggtcaagaattgttcctctcataaattaattacataccggaaataagtaaatgtagtaatcttctattgtgagc 37853543  T
Q  338 atactgctccaagagaaaagacatccattgccaagaaggaagcataccaatattgcagcatattttccctatga 411  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37853542 atactgttccaagagaaaagacatccattgccaagaaggaagcataccaatattgcagcatattttccctatga 37853469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 408
Target Start/End: Complemental strand, 21088709 - 21088599
Alignment:
Q  298 taccggaaataagtaaatgtagtaatcttctattgtgagcatactgctccaagagaaaagacatccattgccaagaaggaagcataccaatattgcagca 397  Q
    |||||| || |||||||| ||||||||| ||||||||||||||||| |||||| ||||||||  ||| |||||||||   |||| | || ||||||||||    
T  21088709 taccgggaacaagtaaatatagtaatctactattgtgagcatactgttccaagcgaaaagacccccaatgccaagaaaccagcaaatcactattgcagca 21088610  T
Q  398 tattttcccta 408  Q
    ||||| |||||    
T  21088609 tatttacccta 21088599  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 21551125 - 21551063
Alignment:
Q  124 agaaatcaaactcaaattcttttgaacaatttgtcatttagtggaattcattaaccacttgag 186  Q
    ||||||||| |||||||| || |||| |||||||  |||||||||||| ||||||||||||||    
T  21551125 agaaatcaatctcaaatttttctgaataatttgttctttagtggaattaattaaccacttgag 21551063  T

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Target: scaffold0008 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 298 - 407
Target Start/End: Original strand, 64757 - 64866
Alignment:
Q  298 taccggaaataagtaaatgtagtaatcttctattgtgagcatactgctccaagagaaaagacatccattgccaagaaggaagcataccaatattgcagca 397  Q
    |||||||||||  ||||  ||||||||||| ||||| | ||||||| |||||||||||||||| ||||| ||||||||  | || |||| |||||||| |    
T  64757 taccggaaatagataaacatagtaatcttcaattgttaacatactgttccaagagaaaagacacccatttccaagaagccaacaaaccactattgcagta 64856  T
Q  398 tattttccct 407  Q
    ||||||||||    
T  64857 tattttccct 64866  T

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Target: scaffold0008; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 407
Target Start/End: Original strand, 52354 - 52444
Alignment:
Q  317 tagtaatcttctattgtgagcatactgctccaagagaaaagacatccattgccaagaaggaagcataccaatattgcagcatattttccct 407  Q
    |||||||||  ||||||||||||||||||||||| |||||||   |||||||||||||   |||| ||||| ||||||||| |||||||||    
T  52354 tagtaatctattattgtgagcatactgctccaagtgaaaagaaccccattgccaagaatccagcaaaccaacattgcagcaaattttccct 52444  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 24182299 - 24182353
Alignment:
Q  147 gaacaatttgtcatttagtggaattcattaaccacttgagtcaaattctttggtt 201  Q
    ||||||||||||||||| |||| || |||||||||||||||| |||| |||||||    
T  24182299 gaacaatttgtcatttaatggagtttattaaccacttgagtctaattatttggtt 24182353  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 41214855 - 41214899
Alignment:
Q  141 tcttttgaacaatttgtcatttagtggaattcattaaccacttga 185  Q
    |||| ||||||||||||||||| ||||| ||||||||||||||||    
T  41214855 tcttatgaacaatttgtcatttggtggagttcattaaccacttga 41214899  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 407
Target Start/End: Complemental strand, 31523224 - 31523134
Alignment:
Q  317 tagtaatcttctattgtgagcatactgctccaagagaaaagacatccattgccaagaaggaagcataccaatattgcagcatattttccct 407  Q
    |||||||||  |||| |||||||||||||||||| |||||||   |||||||||||||   |||| ||||  ||||||||| |||||||||    
T  31523224 tagtaatctattattctgagcatactgctccaagtgaaaagaaccccattgccaagaatccagcaaaccaccattgcagcaaattttccct 31523134  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 3678487 - 3678447
Alignment:
Q  122 tcagaaatcaaactcaaattcttttgaacaatttgtcattt 162  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  3678487 tcagaaatcaaactcaaattcttttaaacgatttgtcattt 3678447  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 20239296 - 20239260
Alignment:
Q  126 aaatcaaactcaaattcttttgaacaatttgtcattt 162  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  20239296 aaatcaaactcagattcttttgaataatttgtcattt 20239260  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 22133280 - 22133244
Alignment:
Q  126 aaatcaaactcaaattcttttgaacaatttgtcattt 162  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  22133280 aaatcaaactcagattcttttgaataatttgtcattt 22133244  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 11744227 - 11744273
Alignment:
Q  147 gaacaatttgtcatttagtggaattcattaaccacttgagtcaaatt 193  Q
    |||| ||||||| ||| |||||| |||||||||||||||||||||||    
T  11744227 gaacgatttgtcctttggtggaactcattaaccacttgagtcaaatt 11744273  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 28811985 - 28812050
Alignment:
Q  123 cagaaatcaaactcaaattcttttgaacaatttgtcatttagtggaattcattaaccacttgagtc 188  Q
    ||||||||||||||| ||| |   |||||||| ||| ||| |||||||||||||| ||||||||||    
T  28811985 cagaaatcaaactcagattgtcccgaacaattcgtcttttggtggaattcattaatcacttgagtc 28812050  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 4239566 - 4239526
Alignment:
Q  146 tgaacaatttgtcatttagtggaattcattaaccacttgag 186  Q
    |||||||||  |||||||||||||||||||| |||||||||    
T  4239566 tgaacaattcatcatttagtggaattcattagccacttgag 4239526  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 3530326 - 3530281
Alignment:
Q  148 aacaatttgtcatttagtggaattcattaaccacttgagtcaaatt 193  Q
    |||||||||| |||| |||||  |||||||||||||||||||||||    
T  3530326 aacaatttgttattttgtggagctcattaaccacttgagtcaaatt 3530281  T

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