View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_60 (Length: 266)
Name: NF1153_low_60
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 9441951 - 9441737
Alignment:
| Q |
23 |
gagatgaaagccatgcatgaatccattgaagccgagaaggcagaggatgtcttgatcggccatagtcttgcacaaaaactaaagggtgcctggtctaatg |
122 |
Q |
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| T |
9441951 |
gagatgaaagccatgcatgaatccattgaagccgagaaggcagaggatggcttgatcggccatagtcttgcacaaaaactaaagggtgcctggtctaatg |
9441852 |
T |
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| Q |
123 |
acgtagttcgaagaggactctatgcaggcatcactgtccaagttgttcaacaaattgtcggtattaatacaatcatgtattacagcccaaccatagttca |
222 |
Q |
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| T |
9441851 |
acgtagttcgaagaggactctacgcaggcatcactgtccaagttgttcaacaaattgtcggtattaatacaatcatgtattacagcccaaccatagttca |
9441752 |
T |
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| Q |
223 |
gtttgctggaattgc |
237 |
Q |
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| T |
9441751 |
gtttgctggaattgc |
9441737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 9453179 - 9452968
Alignment:
| Q |
26 |
atgaaagccatgcatgaatccattgaagccgagaaggcagaggatgtcttgatcggccatagtcttgcacaaaaactaaagggtgcctggtctaatgacg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9453179 |
atgaaagccatgcatgaatccattgaagccgagaaggcagaggaaggcttgatcggtcatagtcttgcacaaaaactaaagggtgcttggtctaatgacg |
9453080 |
T |
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| Q |
126 |
tagttcgaagaggactctatgcaggcatcactgtccaagttgttcaacaaattgtcggtattaatacaatcatgtattacagcccaaccatagttcagtt |
225 |
Q |
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| T |
9453079 |
tagttcgaagaggactctacgcaggcattactgtccaagttgttcaacaatttgtcggtattaatacagtcatgtattacagcccaactatagttcagtt |
9452980 |
T |
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| Q |
226 |
tgctggaattgc |
237 |
Q |
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| T |
9452979 |
tgcaggaattgc |
9452968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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