View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_64 (Length: 258)
Name: NF1153_low_64
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_64 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 39575391 - 39575144
Alignment:
| Q |
11 |
caaaggcctgttgagagtttcgatttgttgccgattccaactgctgcaggagggatttctcatagcaaattaacttatggaaaaacaactcaaggctcac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39575391 |
caaaggcctgttgagagtttcgatttgttgccgattccaactgctgcaggagggatttctcatagcaaattaacttatggaaaaacaactcaaggctcac |
39575292 |
T |
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| Q |
111 |
ctttacctaacataaaccttggcatgaaaatatccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttt |
210 |
Q |
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| T |
39575291 |
ctttacctaacataaaccttggcatgaaaatctccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttt |
39575192 |
T |
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| Q |
211 |
tggaaatgtttataagggagttctcaagaatagaatgaatgtggcagt |
258 |
Q |
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| T |
39575191 |
tggaaatgtttataagggagttctcaagaatggaatgaatgtggcagt |
39575144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 39543542 - 39543309
Alignment:
| Q |
25 |
gagtttcgatttgttgccgattccaactgctgcaggagggatttctcatagcaaattaacttatggaaaaacaactcaaggctcacctttacctaacata |
124 |
Q |
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| T |
39543542 |
gagtttcgatttgttgccgattccaactgctgcaggagagatttctcatagcaaattaacttatggaaaaacaactcaaggctcacctttacctaacata |
39543443 |
T |
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| Q |
125 |
aaccttggcatgaaaatatccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttttggaaatgtttata |
224 |
Q |
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| T |
39543442 |
aaccttggcatgaaaatctccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttttggaaatgtttata |
39543343 |
T |
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| Q |
225 |
agggagttctcaagaatagaatgaatgtggcagt |
258 |
Q |
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| T |
39543342 |
agggagttctcaagaatggaatgaatgtggcagt |
39543309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 39579927 - 39579680
Alignment:
| Q |
11 |
caaaggcctgttgagagtttcgatttgttgccgattccaactgctgcaggagggatttctcatagcaaattaacttatggaaaaacaactcaaggctcac |
110 |
Q |
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||||||||||| |||| || || ||| ||| ||| || | |||||||||||||||| || | ||| | |||||| ||||||||||||||||||||||| | |
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| T |
39579927 |
caaaggcctgtggagaattccggttttttggcgactcaagctgctgcaggagggatatcccttagaagattaacatatggaaaaacaactcaaggctcgc |
39579828 |
T |
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| Q |
111 |
ctttacctaacataaaccttggcatgaaaatatccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttt |
210 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||| |||||| |||| || |||||||||||| | | ||||| || ||||| |||||||| |
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| T |
39579827 |
ctttacctaacataaaccttggcctgaaaatctccttgcttgatcttcaattcgcaacagagaattttgatgcggataggataatcggaaaaggtggttt |
39579728 |
T |
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| Q |
211 |
tggaaatgtttataagggagttctcaagaatagaatgaatgtggcagt |
258 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
39579727 |
tggaaatgtttataagggagttctcaagaatggaatgagtgtagcagt |
39579680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 39520752 - 39520522
Alignment:
| Q |
11 |
caaaggcctgttgagagtttcgatttgttgccgattccaactgctgcaggagggatttctcatagcaaattaacttatggaaaaacaactcaaggctcac |
110 |
Q |
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|||||||||||||||| || ||| | |||||| |||||| |||| |||||||| |||||| |||| ||||||| ||| || ||||| ||||||||||| |
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| T |
39520752 |
caaaggcctgttgagaattccgaatggttgcccattccagctgccagaggagggagttctcacagcagattaactgatgcaacaacaattcaaggctcac |
39520653 |
T |
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| Q |
111 |
ctttacctaacataaaccttggcatgaaaatatccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttt |
210 |
Q |
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|||||||||||||||||||||| ||||||| | |||||||| |||||| | || || || ||||| ||| |||||||||||||||||||||||||||| |
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| T |
39520652 |
ctttacctaacataaaccttggattgaaaatccctttgcttgatcttcaatttgcaacggataatttcgatgcaaagaggattattggaaagggtggttt |
39520553 |
T |
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| Q |
211 |
tggaaatgtttataagggagttctcaagaat |
241 |
Q |
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||||| ||||||||||||||| |||| |||| |
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| T |
39520552 |
tggaattgtttataagggagtcctcacgaat |
39520522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 39510494 - 39510264
Alignment:
| Q |
11 |
caaaggcctgttgagagtttcgatttgttgccgattccaactgctgcaggagggatttctcatagcaaattaacttatggaaaaacaactcaaggctcac |
110 |
Q |
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|||||||||||||| | || ||| | |||||| |||||| |||| |||||||| |||||| |||| ||||||| ||| || | ||| ||||||||| | |
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| T |
39510494 |
caaaggcctgttgaaaattccgaatggttgccaattccagctgccagaggagggagttctcacagcagattaactgatgcaacagcaattcaaggctccc |
39510395 |
T |
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| Q |
111 |
ctttacctaacataaaccttggcatgaaaatatccttgcttgaccttcaaatcgccaccgagaattttgatacaaagaggattattggaaagggtggttt |
210 |
Q |
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||||||||||||||||||| || ||||||| |||||||||| |||||| |||| || || || |||||| |||||||||| ||||||||||||||||| |
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| T |
39510394 |
ctttacctaacataaacctcggattgaaaatccccttgcttgatcttcaattcgcaacggataactttgatgcaaagaggataattggaaagggtggttt |
39510295 |
T |
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| Q |
211 |
tggaaatgtttataagggagttctcaagaat |
241 |
Q |
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||||| |||||||||||||||||||| |||| |
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| T |
39510294 |
tggaattgtttataagggagttctcaggaat |
39510264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 39524237 - 39524107
Alignment:
| Q |
11 |
caaaggcctgttgagagtttcgatttgttgccgattccaactgctgcaggagggatttctcatagcaaattaacttatggaaaaacaactcaaggctcac |
110 |
Q |
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|||||||||||||||| | ||| | |||||| |||||| |||| |||||| | |||||| |||| ||||||| ||| || ||||| ||||||||| | |
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| T |
39524237 |
caaaggcctgttgagaagtccgaatggttgcctattccagctgccagaggaggaagttctcacagcagattaactgatgcaacaacaattcaaggctcgc |
39524138 |
T |
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| Q |
111 |
ctttacctaacataaaccttggcatgaaaat |
141 |
Q |
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|||||||||||||||||||||| ||||||| |
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| T |
39524137 |
ctttacctaacataaaccttggattgaaaat |
39524107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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