View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1153_low_76 (Length: 227)

Name: NF1153_low_76
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1153_low_76
NF1153_low_76
[»] chr8 (2 HSPs)
chr8 (7-227)||(27228605-27228825)
chr8 (49-226)||(27224403-27224580)
[»] chr3 (1 HSPs)
chr3 (51-227)||(19665083-19665259)
[»] chr1 (9 HSPs)
chr1 (105-226)||(48617781-48617902)
chr1 (75-204)||(48661989-48662118)
chr1 (107-204)||(11547686-11547783)
chr1 (75-227)||(48653552-48653704)
chr1 (93-204)||(48667578-48667689)
chr1 (96-204)||(48629293-48629401)
chr1 (91-204)||(48585782-48585895)
chr1 (91-204)||(48640355-48640468)
chr1 (75-204)||(48657023-48657152)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 27228825 - 27228605
Alignment:
Q  7 tattgtctatctatatatctgattctgaagtagagaaaacatggaagaaaaagaaaatgggatattcagaagctcccatcaatattctccttgtttcata 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27228825 tattgtctatctatatatctgattctgaagtagagaaaacatggaagaaaaagaaaatgggatattcagaagctcccatcaatattctccttgtatcata 27228726  T
Q  107 tccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaacagagaaagctggcaga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27228725 tccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaactgagaaagctggcaga 27228626  T
Q  207 gaattgagaactgttaacaac 227  Q
    || ||||||||||||||||||    
T  27228625 gagttgagaactgttaacaac 27228605  T

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Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 49 - 226
Target Start/End: Complemental strand, 27224580 - 27224403
Alignment:
Q  49 ggaagaaaaagaaaatgggatattcagaagctcccatcaatattctccttgtttcatatccagcacaaggacacataaatcctatgcttagattaggaaa 148  Q
    ||||||||| |||||||| |||| |  |||||||| | || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  27224580 ggaagaaaatgaaaatggaatataccaaagctccccttaaaattctccttgtatcatatccagcacaaggacacataaatcctatgcttagactaggaaa 27224481  T
Q  149 gtgtcttgcatcaaagggttcttctgttatcttcatcacaacagagaaagctggcagagaattgagaactgttaacaa 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27224480 gtgtcttgcatcaaagggttcttctgttatcttcatcacaacagagaaagctggcaaagaattgagaactgttaacaa 27224403  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 19665083 - 19665259
Alignment:
Q  51 aagaaaaagaaaatgggatattcagaagctcccatcaatattctccttgtttcatatccagcacaaggacacataaatcctatgcttagattaggaaagt 150  Q
    |||||||||||||||||||  |||||||| |||||  | || |||||| | |||||||||||||||||||||||||| ||| | |||||| ||| |||||    
T  19665083 aagaaaaagaaaatgggatcatcagaagcacccattcacatcctccttatctcatatccagcacaaggacacataaaccctcttcttagactagcaaagt 19665182  T
Q  151 gtcttgcatcaaagggttcttctgttatcttcatcacaacagagaaagctggcagagaattgagaactgttaacaac 227  Q
    |||||||  ||||||||||||| || ||||||||||| |||||||||||||||| |||  ||  |||||||||||||    
T  19665183 gtcttgctgcaaagggttcttcagtcatcttcatcactacagagaaagctggcaaagacatgcaaactgttaacaac 19665259  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 48617781 - 48617902
Alignment:
Q  105 tatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaacagagaaagctggca 204  Q
    ||||||||||||||||||||||| ||| | |||||| ||| ||||||||||||  |||||||| ||||||| ||||||||||||||||||||||||||||    
T  48617781 tatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacagagaaagctggca 48617880  T
Q  205 gagaattgagaactgttaacaa 226  Q
     |||  | ||||||||||||||    
T  48617881 aagacataagaactgttaacaa 48617902  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 48662118 - 48661989
Alignment:
Q  75 gaagctcccatcaatattctccttgtttcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctg 174  Q
    |||||||||||  |||| ||||||||||| | ||||||||||||||||||||| ||| | |||||| ||||||||||||||||  |||| ||| | ||||    
T  48662118 gaagctcccattcatatcctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaagtgtcttgctgcaaaaggtgcctctg 48662019  T
Q  175 ttatcttcatcacaacagagaaagctggca 204  Q
    | || |||| ||||||||||||||||||||    
T  48662018 tcattttcaccacaacagagaaagctggca 48661989  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 11547783 - 11547686
Alignment:
Q  107 tccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaacagagaaagctggca 204  Q
    ||||| ||||||||||||||| ||| | |||||||||| ||||||||||||  |||||||| ||||||| ||||||||||||||| ||||||||||||    
T  11547783 tccaggacaaggacacataaaccctcttcttagattagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaagaaagctggca 11547686  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 48653704 - 48653552
Alignment:
Q  75 gaagctcccatcaatattctccttgtttcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctg 174  Q
    |||||||||||  || | |||||| |||| |||||||||||||||||||| |||||| |||||||  ||| ||||||| ||||  |||||||| ||||||    
T  48653704 gaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaaagggtgcttctg 48653605  T
Q  175 ttatcttcatcacaacagagaaagctggcagagaattgagaactgttaacaac 227  Q
    | || |||||||||||||| | |||||| | |||  | |||||||||||||||    
T  48653604 tcattttcatcacaacagaaagagctggaaaagacataagaactgttaacaac 48653552  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 48667689 - 48667578
Alignment:
Q  93 ctccttgtttcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaacag 192  Q
    ||||||||||| | ||||||||||||||||||||| ||| | |||||| |||| || ||||||||  |||||||| ||||||| ||||||||||||||||    
T  48667689 ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggtaaatgtcttgctgcaaagggtgcttctgtcatcttcatcacaacag 48667590  T
Q  193 agaaagctggca 204  Q
    | |||| |||||    
T  48667589 aaaaaggtggca 48667578  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 48629401 - 48629293
Alignment:
Q  96 cttgtttcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaacagaga 195  Q
    |||||||| | ||||||||||||||||||||| ||| | |||||| ||||||| ||||||||  |||||||| | ||||| ||||| |  ||||||||||    
T  48629401 cttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagaga 48629302  T
Q  196 aagctggca 204  Q
    |||| ||||    
T  48629301 aagcaggca 48629293  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 48585895 - 48585782
Alignment:
Q  91 ttctccttgtttcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac 190  Q
    |||||||||| || | ||||||||||||||||||||| | | |  || || ||||||||| ||||||  |||||||| |  |||||||||||| ||||||    
T  48585895 ttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 48585796  T
Q  191 agagaaagctggca 204  Q
    |||||  |||||||    
T  48585795 agagacggctggca 48585782  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 204
Target Start/End: Complemental strand, 48640468 - 48640355
Alignment:
Q  91 ttctccttgtttcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac 190  Q
    |||||||||| || | ||||||||||||||||||||| | | |  || || ||||||||| ||||||  |||||||| |  |||||||||||| ||||||    
T  48640468 ttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 48640369  T
Q  191 agagaaagctggca 204  Q
    |||||  |||||||    
T  48640368 agagacggctggca 48640355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 48657152 - 48657023
Alignment:
Q  75 gaagctcccatcaatattctccttgtttcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctg 174  Q
    |||||||||||  | ||||||||||| || |||||  || | ||||| |||||  || | |||| | |||| |||||||||||  |||||||||||||||    
T  48657152 gaagctcccattcagattctccttgtatcttatccttcatacggacatataaactctcttcttaaactagggaagtgtcttgctgcaaagggttcttctg 48657053  T
Q  175 ttatcttcatcacaacagagaaagctggca 204  Q
    | ||||||| ||||||  ||||||||||||    
T  48657052 tcatcttcaccacaacgcagaaagctggca 48657023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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