View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_80 (Length: 220)
Name: NF1153_low_80
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 8880347 - 8880235
Alignment:
| Q |
1 |
ctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatctcagacaattgattctgaaaggttaagtgtccaa |
100 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
8880347 |
ctatgcaggtttatttccattgttgtcaagcgggctactgccattactcgaggttgaagaattatctcagactattgattctgaaagtttaagtgtccaa |
8880248 |
T |
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| Q |
101 |
aactctgttctgt |
113 |
Q |
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||||| ||||||| |
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| T |
8880247 |
aactccgttctgt |
8880235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 8884140 - 8884035
Alignment:
| Q |
8 |
ggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatctcagacaattgattctgaaaggttaagtgtccaaaactctg |
107 |
Q |
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||||||||||||||||| || || || ||||||||||| ||| |||||||||| |||||||||| ||||| |||||||| || | |||||||||||||| |
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| T |
8884140 |
ggtttatttccattgctttcgagcggactactgccattacttacggttgaagaaatatctcagactattgactctgaaagtttgactgtccaaaactctg |
8884041 |
T |
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| Q |
108 |
ttctgt |
113 |
Q |
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|||||| |
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| T |
8884040 |
ttctgt |
8884035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 45073488 - 45073406
Alignment:
| Q |
1 |
ctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatctcagacaattgattctg |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45073488 |
ctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatctcagacaattgattctg |
45073406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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