View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1153_low_82 (Length: 217)
Name: NF1153_low_82
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 24419750 - 24419951
Alignment:
| Q |
1 |
caaacaaactaatatgttactcattattcaatcaaaattgtgtaattcttgataacatagcatccaaggagagaatactaaactcatcattttattggta |
100 |
Q |
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| T |
24419750 |
caaacaaactaatatgttactcattattcaatcaaaactgtgtaattcttgagaacatagcatccaaggagagaatactaaactcatcattttattggta |
24419849 |
T |
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| Q |
101 |
tgtactactggtacaattgtcgtatgtaggtttaattaattccttaaaatttcattaatcatactactggtggtctattcatttggtctgctatactgct |
200 |
Q |
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| T |
24419850 |
tgtaatactggtacaattgtcgtatgtaggtttaattaattccttaaaatttcattaatcatactactggtggtctattcatttggtctgctatactgct |
24419949 |
T |
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| Q |
201 |
at |
202 |
Q |
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|| |
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| T |
24419950 |
at |
24419951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 24471790 - 24471712
Alignment:
| Q |
26 |
attcaatcaaaattgtgtaattcttgataacatagcatccaaggagagaatactaaactcatcattttattggtatgta |
104 |
Q |
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| T |
24471790 |
attcaatcaaaactgtgtaattcttgagaacatagcatccaaggagagaatactaaactcatcattttattagtatgta |
24471712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 24471718 - 24471641
Alignment:
| Q |
122 |
gtatgtaggtttaattaattccttaaaatttcattaatcatactactggtggtctattcatttggtctgctatactgctat |
202 |
Q |
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| T |
24471718 |
gtatgtaggtttcattaattcctgaaaatttcattaatca---tactggtgctctattcatttggtctgctatacagctat |
24471641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 24475424 - 24475483
Alignment:
| Q |
126 |
gtaggtttaattaattccttaaaatttcattaatcatactactggtggtctattcatttg |
185 |
Q |
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| T |
24475424 |
gtaggtttgattaattcatgaaaattgaattaatcatactactgctggtctattcatttg |
24475483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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