View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1153_low_83 (Length: 217)
Name: NF1153_low_83
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_83 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 34255534 - 34255396
Alignment:
| Q |
79 |
cgaagaatatacctggtgataacctcctcttttcgtgacctccaagtaaaacaggtacaagtcaagggatgtttttcggacatcatatctgccaaataga |
178 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34255534 |
cgaacaatatacctggtgataacctcctcttttcgtgacctccaagtaaaacaggtacaagtcaagggatgtttttcggacatcatatctgccaaataga |
34255435 |
T |
|
| Q |
179 |
attggaaaaagaggtgcatgatgattcatacattttata |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34255434 |
attggaaaaagaggtgcatgatgattcatacattttata |
34255396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 41551745 - 41551644
Alignment:
| Q |
84 |
aatatacctggtgataacctcctcttttcgtgacctccaagtaaaacaggtacaagtcaagggatgtttttcggacatcatatctgccaaatagaattgg |
183 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| || ||||||| |||||||| | ||||||||||||||||| |
|
|
| T |
41551745 |
aatatacctggtgataacctcctcttcttgtgacctccaagtaaaagaggtacaagtctagagatgtttctcggacattgaaactgccaaatagaattgg |
41551646 |
T |
|
| Q |
184 |
aa |
185 |
Q |
| |
|
|| |
|
|
| T |
41551645 |
aa |
41551644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 37556785 - 37556731
Alignment:
| Q |
87 |
atacctggtgataacctcctcttttcgtgacctccaagtaaaacaggtacaagtc |
141 |
Q |
| |
|
||||||||||| ||||||||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
37556785 |
atacctggtgaaaacctcctcttctggtgacttccaagtaaaagaggtacaagtc |
37556731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University