View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1153_low_9 (Length: 456)
Name: NF1153_low_9
Description: NF1153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1153_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 28 - 445
Target Start/End: Complemental strand, 42104018 - 42103604
Alignment:
| Q |
28 |
catcagcatctgcagcctggcctagccgtgaacattgatccaattattaggcagccagagaatgctgcaatcactatgcctgcagcaaatatgaaaggtg |
127 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42104018 |
catcagcatctgcagtccggcctagccgtgaacattgatccaatta---ggcagccagagaatgctgcaatcactatgcctgcagcaaatatgaaaggtg |
42103922 |
T |
|
| Q |
128 |
acgaaatcacaggaggagacataaattatttcgctaaagacgcattccaaaacgagctggataggtttggatcaccaattactaacatgtcatttgattt |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42103921 |
acgaaatcactggaggagacataaattatttcgctaaagacgcattccaaaacgagctggataggtttggatcaccaatcactaacatgtcatttgattt |
42103822 |
T |
|
| Q |
228 |
tggagttcttgacaatccaccatcaccgccattccttttagatgatttcatgggtatgggcgacgatgaaatgatacagtactttggcgggtagcagatt |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42103821 |
tggagttcttgacaatccaccatcaccgccattccttttagatgatttcatgggtatgggtgacgatgaaatgatacagtactttggcgggtagcagatt |
42103722 |
T |
|
| Q |
328 |
attgaactagtaattcagcagaagctgtaagtgttattcctctcttaaattatgcttctaattagtttctgcgaattgtgactcgacttatttgttgtgt |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42103721 |
attgaactagtaattcagcagaagctgtaagtgttattcctctcttaaattatgcttctaattagttactgcgaattgtgactcgacttatttgttgtgt |
42103622 |
T |
|
| Q |
428 |
tgtgtttgtttcaccttt |
445 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
42103621 |
tgtgtttgtttcatcttt |
42103604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 73 - 384
Target Start/End: Complemental strand, 42113166 - 42112854
Alignment:
| Q |
73 |
attaggcagccagagaatgctgcaatcactatgcctgcagcaaatatgaaaggtgacgaaatcacaggaggagacataaattatttcgctaaagacgcat |
172 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| |||| ||||| ||||| | ||||||| ||| |||||| | ||||||||| ||| |
|
|
| T |
42113166 |
attaggcaaccagagaatgctgcaataactatgcctgcagcaaatgtgaatggtgatgaaattatcggaggaggcatgaattatattgctaaagacacat |
42113067 |
T |
|
| Q |
173 |
tccaaaacgagctggataggtttggatcaccaattactaacatgtcatttgattttggagttcttgacaatccaccatcaccgccattccttttagatga |
272 |
Q |
| |
|
||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42113066 |
tcccaaacgagctggataggtttggatcaccgttgagtaacatgtcatttgattttggagttcttgacaatccaccatcaccgccattccttttagatga |
42112967 |
T |
|
| Q |
273 |
tttcatgggtatgggcgacgatgaaatgatacagtactttggcgggtagcagattattg-aactagtaattcagcagaagctgtaagtgttattcctctc |
371 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||||||| | ||| ||||||||| || |||| | |||||||||||||||||| ||||| || | |
|
|
| T |
42112966 |
tttcatgggtttgggtgacgatgaaatgatgcagtactttggagcatagaagattattgaaattagtgactcagcagaagctgtaagttctattcttcac |
42112867 |
T |
|
| Q |
372 |
ttaaattatgctt |
384 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42112866 |
ttaaattatgctt |
42112854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University