View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11540_high_2 (Length: 353)
Name: NF11540_high_2
Description: NF11540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11540_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 49861754 - 49861459
Alignment:
| Q |
13 |
tgaagcaggggcggacgggtccacgtaaaagatgaaaggttgacgacggagatggcggttacggcggaggtgttgacgtgtgcgatcacgtagaaggtag |
112 |
Q |
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| T |
49861754 |
tgaagcaggggcggacgggtccacgtaaaagatgaaaggttgacgacggag------------------gtgttgacgtgtgcgatcacgtagaaggtag |
49861673 |
T |
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| Q |
113 |
tatcgaattagaaaatggagacagagcattattatgataacggcgaagagaatgataatggcggttagcattatcttgccgctgagggcataattgtttt |
212 |
Q |
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| T |
49861672 |
tatcgaattagaaaatggagacagagcattattatgataacggcgaagagaatgataatggcggttagcattatcttgccgctgagggcataattgtttt |
49861573 |
T |
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| Q |
213 |
cgatttctctttcattatccatgttcgaattcatctgagtagaataaatgaatggcacagtaaaatgttgttggaattgagaatgggaaggttacttcga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49861572 |
cgatttctctttcattatccatgttcgaattcatctgagtagaataaatgaatggcacagtaaaatgttgttggaattgagaatgggaaggttacttcga |
49861473 |
T |
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