View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11540_low_1 (Length: 770)
Name: NF11540_low_1
Description: NF11540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11540_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 281 - 732
Target Start/End: Complemental strand, 52060270 - 52059817
Alignment:
| Q |
281 |
tagtagtatgtagagatgattttcaaaattaattttgtttatagaatgactattagaattattttattgagttcaacacttcttgagaggaatgtaatcc |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52060270 |
tagtagtatgtagagatgattttcaaaattaattttgtttatagaatgactattagaattattttattgagttcaacacttcttgagaggaatgtaatcc |
52060171 |
T |
|
| Q |
381 |
taaatcatcggcattgggggtacagtagggggacaattagggagtttcggggtacaattgggcaaaatttgctaagctaagtaacaa------------- |
467 |
Q |
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| T |
52060170 |
taaatcatcggcattgggg-tacagtagggggacaattagggagtttcgggg---------gcaaaatttgctaagctaagtaataattttacttggaca |
52060081 |
T |
|
| Q |
468 |
atcaaggtgaattagcgactcttgagaacaaccggcgattactttaagatgaagaaaatgcagctcgtcaagcgaactacaatttcacttggtgaaatct |
567 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52060080 |
atcaaggtgaattagcgactcttgagaacaaccggcgattactttaaaatgaagaaa-tgcagctcgtcaagcgaactacaatttcacttggtgaaatct |
52059982 |
T |
|
| Q |
568 |
cacttaccctctcactataaataaagttcatgtcttccatttgaagaataaaaacgttggaattaaagtagagttgttgaaaggaatggggtgttcaagt |
667 |
Q |
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| T |
52059981 |
cacttaccctctcactataaataaagttcatgtcttccatttgaagaataaaaatgtgcgaattaaagtagagttgtagaaaggaatggggtgttcaagt |
52059882 |
T |
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| Q |
668 |
attgatatcatttcatctcaactcttatcaattgtgtaaagctatcctaacaatgagtagttaat |
732 |
Q |
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| T |
52059881 |
attgatatcatttcatctcaattcttatcaattgtgtaaagctatcctaacaatgagtagttaat |
52059817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 52060829 - 52060552
Alignment:
| Q |
1 |
ctccgtggtgattgaaagaaaatgtaaaagttccttttgcaaataataataaatnnnnnnnnggatcaagaggaacaaccaagaatcatcaaattagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52060829 |
ctccgtggtgattgaaagaaaatgtaaaagttccttttgcaaataataataaataaataaaaggatcaagaggaacaaccaagaatcatcaaattagaaa |
52060730 |
T |
|
| Q |
101 |
gtggttgtgtgtgtgaaaaggaaaagatagttatttgcgtatagtgtatagtgtagaattatgaaaataattgctctcttaacctttatacatttgtttt |
200 |
Q |
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| T |
52060729 |
gtggttgtgtgtgtgaaaaggaaaagatagttatttgcgtatagtgtatagtgtagaattatgaaaataattgctctcttaacctttatacatttgtttt |
52060630 |
T |
|
| Q |
201 |
gtattaactagaaaaacaatgattgtcggaagccgagtcacattaaaaccttgaattggttacatatcttgtcatata |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
52060629 |
gtattaactagaaaaacaatgattgtcggaagccgagtcacattaaaaccttgaattggttacattttttgttatata |
52060552 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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