View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11540_low_5 (Length: 313)
Name: NF11540_low_5
Description: NF11540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11540_low_5 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 57451 - 57164
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
57451 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtcta |
57352 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
57351 |
atttattcaagaggcgatttttctcaaacggtcagccctccatgcgttattttaaatcctcggtttggtcgggtattaaaatacatattggcacggttat |
57252 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttgatg |
298 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57251 |
gagcaattcattgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttgatg |
57164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 21879596 - 21879309
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
21879596 |
gatgaaggtgggttagacatcaaacatacgtgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacgggaaacacagtggtcta |
21879497 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||||| |
|
|
| T |
21879496 |
atttattcaaaagaagatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcgggtattaaacttcatattggcacggttat |
21879397 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttgatg |
298 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
21879396 |
gagcaattctttgtggattgtgggaaatggaaacaatattcatttttggactgataattggctaggtgttcctcttgtggagttgatg |
21879309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 1926403 - 1926116
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| | ||||| |||||||| |
|
|
| T |
1926403 |
gatgaaggtgggttagacatcaaaactacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacggcaaacatagtggtctc |
1926304 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||||| |
|
|
| T |
1926303 |
atttattcaagaggcgatatttttcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcgggtattaaacttcatattggcacggttat |
1926204 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttgatg |
298 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
1926203 |
gagcaattctttgtggattgtgggaaatggaaacaatattcatttctggactgataattggctaggtgttcctcttgtcgatttgatg |
1926116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 21811492 - 21811779
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |
|
|
| T |
21811492 |
gatgaaggtgggttagacctcatgcctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacgggaaacacagtggtctc |
21811591 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|| | ||||| ||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||| | ||| ||| | ||||||||||||||||| |
|
|
| T |
21811592 |
atcttttcaaaaggagatatttctcaaacggtcagccctccatgcactattttaaatcatccgtttggtcgggtattaaacttcatattggcacggttat |
21811691 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttgatg |
298 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
21811692 |
gagcaattctttgtggattgtgggaaatggaaacaatattcatttctggactgataattggctaggtgttcctcttgtagagttgatg |
21811779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 29304668 - 29304501
Alignment:
| Q |
13 |
tgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtctaat |
112 |
Q |
| |
|
|||||||||||| || ||||| |||||||| ||||||||||||||||| ||||| ||||| | ||||||| |||||||| | || || || ||||| ||| |
|
|
| T |
29304668 |
tgaaggtgggtttgatatcaagcctacgcgtttgattaacgaggctttgattcttaaattttcttgggatttaattgcaaaagatactcaatggtcgaat |
29304569 |
T |
|
| Q |
113 |
ttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtc |
180 |
Q |
| |
|
||||| |||| ||| ||||||||| | |||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
29304568 |
ttatttaagatgcgttatttctcacatggtcagcctagcaagcgctgttttaaatcctcggtttggtc |
29304501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 41345599 - 41345427
Alignment:
| Q |
7 |
gtgagatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtgg |
106 |
Q |
| |
|
||||| |||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||| ||||| | ||||||| |||||||| | || || || ||| |
|
|
| T |
41345599 |
gtgagctgaaggtgggtttgatatcaagcctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatgg |
41345500 |
T |
|
| Q |
107 |
tctaatttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtc |
180 |
Q |
| |
|
|| |||||||| |||| ||| ||||||||| | ||||| || || |||||||||||||||||| |||||||| |
|
|
| T |
41345499 |
tcgaatttatttaagatgcgttatttctcacatggtca-cctagcaagcgctattttaaatcctcagtttggtc |
41345427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 21317 - 21030
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| | ||||| |||||||| |
|
|
| T |
21317 |
gatgaaggtgggttagacttcatttctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacggtaaacatagtggtctc |
21218 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|||| ||||| ||| ||||||| |||||||||||||||||||||| |||||||||||| || |||||||| | ||| ||| | ||||||||||||||||| |
|
|
| T |
21217 |
attttttcaataggtgatatttttcaaacggtcagccctccatgctctattttaaatcttctgtttggtcgggtattaaacttcatattggcacggttat |
21118 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttgatg |
298 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
21117 |
gagcaattctttgtggattgtgggaaatggaaacaatattcatttctggactgataattggctaggtgttcctcttgtagagttgatg |
21030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 14350 - 14637
Alignment:
| Q |
11 |
gatgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtcta |
110 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14350 |
gatgaaggtgggttagatatcagacctacgcgattgattaatgaggctttaattctaaaattatcttgggatttaattgcacaggaaacacagtggtcta |
14449 |
T |
|
| Q |
111 |
atttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcagatataaaaatacatattggcacggttat |
210 |
Q |
| |
|
|||||||||| || ||||||||||| |||| |||||||||||||||||||||||||||||||||||| | || ||| || |||||||||||||| | |
|
|
| T |
14450 |
gtttattcaagcagctttatttctcaaatggtcggccctccatgcgctattttaaatcctcggtttggtcgggcattaaagtatatattggcacggtttt |
14549 |
T |
|
| Q |
211 |
gaggaatattttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttgatg |
298 |
Q |
| |
|
||| ||| |||||||||||| ||| ||||||| |||||| |||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
14550 |
gagcaattctttgtggattgttggagatggaaataatattaatttctggactgataattggttagatgatcctcttgtggatttgatg |
14637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 10137201 - 10137368
Alignment:
| Q |
13 |
tgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgcacaggaaacacagtggtctaat |
112 |
Q |
| |
|
|||||||| || |||||||||||||| | |||||||| || ||||| ||| | ||||| ||||||||| |||||||| | || ||||| |||||||| |
|
|
| T |
10137201 |
tgaaggtgttttggacatcaaacctacatgtttgattaatgaagctttgattattaaattgttttgggatttaattgcagaagatacacaatggtctaac |
10137300 |
T |
|
| Q |
113 |
ttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtc |
180 |
Q |
| |
|
||||||| ||| ||| ||||||| |||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
10137301 |
ttattcagattgcgttatctctcaaatggtcagccaagaaagcgctattttaagtcctcggtttggtc |
10137368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 20424785 - 20424952
Alignment:
| Q |
14 |
gaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgc-acaggaaacacagtggtctaat |
112 |
Q |
| |
|
||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||| |||| | ||||||| || |||| ||| || || || |||||||| |
|
|
| T |
20424785 |
gaaggtgggttggatatcaagcctacgcgtttgattaacgaagctttgattcttaaatattcttgggatttacttgctaca-gatactcaatggtctaac |
20424883 |
T |
|
| Q |
113 |
ttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtca |
181 |
Q |
| |
|
| || |||||||| ||||||||||| ||| |||| | ||||||| |||||||| || ||||||||| |
|
|
| T |
20424884 |
cttttaaagaggcgttatttctcaaatggtaagcctagcttgcgctactttaaatcgtctgtttggtca |
20424952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 10610054 - 10609885
Alignment:
| Q |
13 |
tgaaggtgggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattattttgggatataattgc-acaggaaacacagtggtctaa |
111 |
Q |
| |
|
|||||||||| | || ||||| |||||||| ||| ||||||| ||||| ||| | ||||| | ||||||| ||||||| |||| | || || |||||||| |
|
|
| T |
10610054 |
tgaaggtgggctggatatcaagcctacgcgtttgtttaacgaagctttgattattaaattgtcttgggatttaattgctacag-atactcaatggtctaa |
10609956 |
T |
|
| Q |
112 |
tttattcaagaggcgatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcag |
182 |
Q |
| |
|
| || |||||||| |||||| |||| ||| |||| | |||| |||||||| || ||||||||||||| |
|
|
| T |
10609955 |
ccttttaaagaggcgttatttcccaaatggtaagcctagcttgcgttattttaagtcttcggtttggtcag |
10609885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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