View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11540_low_7 (Length: 225)
Name: NF11540_low_7
Description: NF11540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11540_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 28722629 - 28722471
Alignment:
| Q |
11 |
gagcagagagaaggggaggataaatgaaggggacaatcacagaggatgggggcggtgccgcggttgcagtcttgcaggaggtgaactacgttttggcttt |
110 |
Q |
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| T |
28722629 |
gagcacagagaaggggaggataaatgaaggggacaatcacagaggatgggggcggtgccacggttgcagtcttgcaggaggtgaactacgttttggcttt |
28722530 |
T |
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| Q |
111 |
tccaggataggttttgaatggaataaagattggctacagtaaaatacgttttggctttc |
169 |
Q |
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| T |
28722529 |
tccaggataggttttgaatggaataaagattggctacagtaaaatacgttttggctttc |
28722471 |
T |
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