View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11540_low_8 (Length: 205)
Name: NF11540_low_8
Description: NF11540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11540_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 13716595 - 13716414
Alignment:
| Q |
17 |
acatactttcgtaaatgccctccactatcacatgctcccttctctcagttctctgggtttttcattttctctcataaacataaggataatcatcaaccct |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| || ||||| ||| ||| |||||||| |
|
|
| T |
13716595 |
acatacgttcgtaaatgccctccactatcacatgctcccttctctcagttctctgtgttc--catttactc--attaacat---gatcatcttcaaccct |
13716503 |
T |
|
| Q |
117 |
atcaaattctcccccaaacccaaatcaaacttctaagttccaagt--tctaacatcaccacacagaaaactcaaaacaacaacacacac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13716502 |
atcaaattctcccccaaacccaaatcaaacttctaagttccaagttctctaacatcaccacacagaaaactcaaaacaacaacacacac |
13716414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University