View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11541_high_1 (Length: 994)

Name: NF11541_high_1
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11541_high_1
NF11541_high_1
[»] chr8 (1 HSPs)
chr8 (16-983)||(43867369-43868336)
[»] chr1 (1 HSPs)
chr1 (434-487)||(50056084-50056137)


Alignment Details
Target: chr8 (Bit Score: 867; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 867; E-Value: 0
Query Start/End: Original strand, 16 - 983
Target Start/End: Complemental strand, 43868336 - 43867369
Alignment:
Q  16 caagatcaacatcaaactcacagaaactatccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868336 caagatcaacatcaaactcacagaaactatccaagtcacacatttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggtt 43868237  T
Q  116 ggcatcgaaaactggcacacgacacagcaactgctcctcatcagcctcgtcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868236 ggcatcgaaaactggcacacgacacagcaactgctcctcatcagcctcatcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttca 43868137  T
Q  216 ggaacaagtggaagaaaactagtattgaagagaactttttccttgagacgttgttgttgttgttgaatcgacgaatttttgttgtggcggggagttcttg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43868136 ggaacaagtggaagaaaactagtattgaagagaactttttccttgagacgttgctgttgttgttgaatcgacgaatttttgttgtggcggggagttcttg 43868037  T
Q  316 ctttccttgtgaatccactgtgccatgcttgtgctgttgttgttaccttagcagatgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43868036 ctttccttgtgaatccactgtgccatgcttgtgctgttgttgttaccttagcagacgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatt 43867937  T
Q  416 tgcagagtgaaccaaattgtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctctt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43867936 tgcagagtgaaccaaattgtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctctt 43867837  T
Q  516 gctgtcttggctcccaaggcacctgcatctgcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtcnnnnnnnnnnnnn 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  43867836 gctgtcttggctcccaaggcacctgcatctgcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtc------aaaaaaa 43867743  T
Q  616 tgattcaattaatggtttgtgtttgttgaaactagacaatgtgatgaaggagacacactagtgtcagtaggtac------nnnnnnnncttctctctgcc 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||    
T  43867742 tgattcaattaatggtttgtgtttgttgaaactagacaatgtgatgaaggagacacactagtgtcagtaggtactttttttttttttttttctctctgcc 43867643  T
Q  710 catgcacttttggtaatttgctacaggaatattaatggaggttaatgggacccaccaattggtatgatcttagtgttgattggctagagagttgaagtta 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43867642 catgcacttttggtaatttgctacaggaatattaatggaggttaatgggacccaccaattggtatgatcttagtgttgattggctagagagttgaagtta 43867543  T
Q  810 atcttattctctgaattctaattggttgtctttttaattataggatttcttatggacccattagggtttgtgcattaaatttttgagtaagacatatttg 909  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43867542 atcttattctctgaattctaattggttgtctttttaattataggatttcttatggacccattagggtttgtgcattaaatttttgagtaagacatatttg 43867443  T
Q  910 ttgtgttacatgtataataattcaataatgtctgctatttgaggtcccctctccttaggttgctttcatctcac 983  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43867442 ttgtgttacatgtataataattcaataatgtctgctatttgaggtcccctctccttaggttgctttcatctcac 43867369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 434 - 487
Target Start/End: Original strand, 50056084 - 50056137
Alignment:
Q  434 gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctct 487  Q
    ||||||| | ||||| || ||||||||||| ||||||||| |||||||||||||    
T  50056084 gtcacaagcttgacagagaaaagcatcatcagcagcacaataccaacgtgctct 50056137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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