View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11541_high_13 (Length: 378)

Name: NF11541_high_13
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11541_high_13
NF11541_high_13
[»] chr7 (2 HSPs)
chr7 (24-370)||(22276302-22276652)
chr7 (48-76)||(6241891-6241919)
[»] chr1 (3 HSPs)
chr1 (68-164)||(11038905-11039000)
chr1 (48-193)||(10682660-10682809)
chr1 (74-164)||(45982611-45982700)
[»] chr5 (2 HSPs)
chr5 (251-346)||(41486275-41486372)
chr5 (31-71)||(42680663-42680703)
[»] chr2 (2 HSPs)
chr2 (251-324)||(10850692-10850767)
chr2 (251-324)||(10878206-10878281)
[»] chr8 (1 HSPs)
chr8 (68-182)||(8234956-8235068)
[»] chr3 (1 HSPs)
chr3 (229-286)||(26150504-26150563)
[»] scaffold2079 (1 HSPs)
scaffold2079 (48-76)||(75-103)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 24 - 370
Target Start/End: Complemental strand, 22276652 - 22276302
Alignment:
Q  24 tcgtgaaaaccggtgaatcgagaaaagtgggtgaagatcgaagaaagat---gaagttgagtaggagataaaagataaagaaaaagctttagggaagtaa 120  Q
    ||||||||| || |||||||| |||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||  |||||||    
T  22276652 tcgtgaaaatcgatgaatcgaaaaaaatgggtgaagatcgaagaaagataaagaagttgagtaggagataaaagataaagaaaaagctttaatgaagtaa 22276553  T
Q  121 ataaattttgcatgaaaatctctttgtagcttggagaaagagaacgtatttttgcaaaataacactgacaaaaacaaaatgaatat-nnnnnnntgtttc 219  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||        ||||||    
T  22276552 ataaattttacatgaaaatctctttgtagcttggagaaagagaacatatttttgcaaaataacactgactaaaacaaaatgaatataaaaaaaatgtttc 22276453  T
Q  220 tgaaaatgtgcactactttgttgtaggagattactataatttttctac-tttttgcaatattaagataacttatatacttaattagataatactagtact 318  Q
    | ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  22276452 taaaaatgt-cactactttgttgcaggagattactataatttttctacttttttgcaatattaagataacttatatacttaattaggtaatattagtact 22276354  T
Q  319 acgaacggacgtgtaccaaaactttatatcacatacgtaatgaattcttctc 370  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  22276353 acgaaccgacgtgtaccggaactttatatcacatacgtaatgaattcttctc 22276302  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 6241891 - 6241919
Alignment:
Q  48 aagtgggtgaagatcgaagaaagatgaag 76  Q
    |||||||||||||||||||||||||||||    
T  6241891 aagtgggtgaagatcgaagaaagatgaag 6241919  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 164
Target Start/End: Original strand, 11038905 - 11039000
Alignment:
Q  68 aagatgaagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaa 164  Q
    ||||||||||||||||||||||||||||||||| |||| |||  | || | |||||||||||| || |||||||||||  |||||||||||||||||    
T  11038905 aagatgaagttgagtaggagataaaagataaaggaaaaccttccgtgacgcaaataaattttggat-aaaatctctttaaagcttggagaaagagaa 11039000  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 10682809 - 10682660
Alignment:
Q  48 aagtgggtgaagatcgaagaaagatgaa------gttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatct 141  Q
    |||| ||||||||||||||||||| |||      |||||||| |||||||||||||||| | || |||    |  | |||||||||||| | ||||||||    
T  10682809 aagtaggtgaagatcgaagaaagaggaataagaggttgagtatgagataaaagataaaggagaatcttggatgctgaaaataaattttgta-gaaaatct 10682711  T
Q  142 ctttgtagcttggagaaagagaacgtatttttgcaaaataacactgacaaaa 193  Q
    ||||| |||||||||||||||||| |  | ||||||||||||||||| ||||    
T  10682710 ctttgaagcttggagaaagagaacat-gtcttgcaaaataacactgataaaa 10682660  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 45982611 - 45982700
Alignment:
Q  74 aagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaa 164  Q
    |||||||||||||||| || ||||||  |||| |||  | |  | ||||||||||||||| |||||||||||| ||| |||||||||||||    
T  45982611 aagttgagtaggagatgaatgataaaagaaaaccttcggcggtgcaaataaattttgcat-aaaatctctttgaagcatggagaaagagaa 45982700  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 346
Target Start/End: Complemental strand, 41486372 - 41486275
Alignment:
Q  251 tactataatttttctactt-tttgcaatattaagataacttat-atacttaattagataatactagtactacgaacggacgtgtaccaaaactttata 346  Q
    |||||||||  |||||||| ||||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||| ||||  |||| || |||||||    
T  41486372 tactataatccttctacttgtttgcaatattaagatagcttattatacttaattaaatagtactagtactacgaaccgacgcatacctaatctttata 41486275  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 42680703 - 42680663
Alignment:
Q  31 aaccggtgaatcgagaaaagtgggtgaagatcgaagaaaga 71  Q
    ||||||| |||||||| |||||| |||||||||||||||||    
T  42680703 aaccggttaatcgagataagtggatgaagatcgaagaaaga 42680663  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 10850767 - 10850692
Alignment:
Q  251 tactataatttttctac-tttttgcaatattaagataactta-tatacttaattagataatactagtactacgaac 324  Q
    |||||||||  |||||| ||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||||    
T  10850767 tactataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtactacgaac 10850692  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 10878281 - 10878206
Alignment:
Q  251 tactataatttttctac-tttttgcaatattaagataactta-tatacttaattagataatactagtactacgaac 324  Q
    |||||||||  |||||| ||||||||||||||||||| |||| ||||||||||||| || ||||||||||||||||    
T  10878281 tactataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattactagtactacgaac 10878206  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 8234956 - 8235068
Alignment:
Q  68 aagatgaagttgagtaggagataaaagataaagaaaaagctttagggaagtaaataaattttgcatgaaaatctctttgtagcttggagaaagagaacgt 167  Q
    ||||||| ||||||||  ||||||||||||||| ||||  |   | || | ||||||||||||||| |||||||||||| | ||||||||||||||| ||    
T  8234956 aagatgaggttgagtattagataaaagataaaggaaaacatacggtgatgcaaataaattttgcat-aaaatctctttgaaacttggagaaagagaatgt 8235054  T
Q  168 atttttgcaaaataa 182  Q
      |||||||||||||    
T  8235055 -cttttgcaaaataa 8235068  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 26150504 - 26150563
Alignment:
Q  229 gcactactttgttgtaggagattactataatttttctac--tttttgcaatattaagata 286  Q
    |||||| |||||||||| ||| |||||||||| ||||||  |||||||||||||||||||    
T  26150504 gcactagtttgttgtagcagactactataattcttctactttttttgcaatattaagata 26150563  T

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Target: scaffold2079 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 75 - 103
Alignment:
Q  48 aagtgggtgaagatcgaagaaagatgaag 76  Q
    |||||||||||||||||||||||||||||    
T  75 aagtgggtgaagatcgaagaaagatgaag 103  T

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