View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_high_15 (Length: 359)
Name: NF11541_high_15
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 29252339 - 29252606
Alignment:
| Q |
17 |
aatttggttgtagaagtagtaagttatattgatctatagaactatacgaaagatcaccgaaaaaggaagttgctgataggatgtgtatgagaaataccag |
116 |
Q |
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| T |
29252339 |
aatttggttgtagaagtagtaagttatattgatcta--gaactatacgaaagatcaccgaaaaaggaagttgctgataggatgt--atgagaaataccag |
29252434 |
T |
|
| Q |
117 |
gaagaataattccaaccataagagagaaacctttgaaattgaaggaagtaatcaagtaatcgagcaag---catgctttgtaatagagtgctcaatgcat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||| |
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| T |
29252435 |
gaagaataattccaaccataagagagaaacctttgaaattgaaggaagtaatcaagtaatcgaggaagcatcatgctttgtaatagagtgctaaatacat |
29252534 |
T |
|
| Q |
214 |
ggtctaatagacatatatcaatcaaattctaaaaactattttgtaaatcactttatttaattgttgaaactaagta |
289 |
Q |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29252535 |
ggtctaatagac----atcaatcaaattctaaatactattttgtaaatcactttatttaattgttgaaactaagta |
29252606 |
T |
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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 7249940 - 7249997
Alignment:
| Q |
234 |
atcaaattctaaaaactattttgtaaatcactttatttaattgttgaaactaagtagg |
291 |
Q |
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| T |
7249940 |
atcaaattctaaaaacttttttgtaaatcactttatttaattgttgaaactaagtagg |
7249997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 9212639 - 9212586
Alignment:
| Q |
236 |
caaattctaaaaactattttgtaaatcactttatttaattgttgaaactaagta |
289 |
Q |
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||||||||||| | ||||||||| |||||||||||||||||||||||||||||| |
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| T |
9212639 |
caaattctaaagaatattttgtagatcactttatttaattgttgaaactaagta |
9212586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 9892544 - 9892572
Alignment:
| Q |
250 |
tattttgtaaatcactttatttaattgtt |
278 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
9892544 |
tattttgtaaatcactttatttaattgtt |
9892572 |
T |
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