View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11541_high_20 (Length: 297)
Name: NF11541_high_20
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 24025891 - 24026159
Alignment:
| Q |
12 |
atgaatgcaaaagaaaattaaataacacaagaaatagttaattaatttatctaaactaagcaatacctttgcggaaatagtgtgaagaccttcatcagca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24025891 |
atgaatgcaaaagaaaattaaataacacaagaaatagttaattaatttatctaaactaagcaatacctttgcggaaatagtgtgaagaccttcatcagca |
24025990 |
T |
|
| Q |
112 |
acaacatagtaatcagctaaaacaacgacatgtgtttgaatatcctcagacacacatttagtacctgaacttggaatggtcaaccatatagcttctgttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24025991 |
acaacatagtaatcagctaaaacaacgacatgtgtttgaatatcctcagacacacatttagtacctgaacttggaatagtcaaccatatagcttctgttt |
24026090 |
T |
|
| Q |
212 |
ttagaaagagagttgttaagcacaataacaatactagcagcgtagtgattccacttcgatctcttaact |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24026091 |
ttagaaagagagttgttaagcacaataacaatactagcagcatagtgattccacttcgatctcttaact |
24026159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 32664623 - 32664696
Alignment:
| Q |
109 |
gcaacaacatagtaatcagctaaaacaacgacatgtgtttgaatatcctcagacacacatttagtacctgaact |
182 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||| ||||||| ||||| || ||||| |||||||| |
|
|
| T |
32664623 |
gcaacaacatagtaattggctaaaacaacaacgtgtgtttggatatcctgcgacacgcacttagttcctgaact |
32664696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University