View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11541_high_23 (Length: 251)
Name: NF11541_high_23
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_high_23 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 6840848 - 6840749
Alignment:
| Q |
152 |
tgattcatggaatgaagatgagagaaatatcggataccataacctagcctcaaaattcaatccaatccttcttcaattttctaccctttgcttctcctct |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
6840848 |
tgattcatggaatgaagatgagagaaatatctgataccataacctagcctcaaaattcaatccaatccttcttcaattttctacctttttcttcttctct |
6840749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6841000 - 6840950
Alignment:
| Q |
1 |
atccaaaaattgctccaaggaattctttcattccaccatcatcaaatagtt |
51 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6841000 |
atccaaaaattgctccaaggaattcaatcattccaccatcatcaaatagtt |
6840950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 2188392 - 2188491
Alignment:
| Q |
152 |
tgattcatggaatgaagatgagagaaatatcggataccataacctagcctcaaaattcaatccaatccttcttcaattttctaccctttgcttctcctct |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
2188392 |
tgattcatggaatgaagatgagagaaatatctgataccataacctaacctcaaaattcaatccaatccttcttcaattttctacctttttcttcttctct |
2188491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2188241 - 2188291
Alignment:
| Q |
1 |
atccaaaaattgctccaaggaattctttcattccaccatcatcaaatagtt |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2188241 |
atccaaaaattgctccaaggaattctttcattccaccatcatcaaatagtt |
2188291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 784394 - 784493
Alignment:
| Q |
152 |
tgattcatggaatgaagatgagagaaatatcggataccataacctagcctcaaaattcaatccaatccttcttcaattttctaccctttgcttctcctct |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||| |
|
|
| T |
784394 |
tgattcatggaatgaagatgagagaaatatctgataccataacctagcctcaaaattcaatccaatcctttttcaattttctacctttttcttcttctct |
784493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 784259 - 784291
Alignment:
| Q |
19 |
ggaattctttcattccaccatcatcaaatagtt |
51 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
784259 |
ggaactctttcattccaccatcatcaaatagtt |
784291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 48002198 - 48002148
Alignment:
| Q |
1 |
atccaaaaattgctccaaggaattctttcattccaccatcatcaaatagtt |
51 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48002198 |
atccaaaaatagttccaaggaattctttcattccaccatcatcaaatagtt |
48002148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 219
Target Start/End: Original strand, 41365314 - 41365343
Alignment:
| Q |
190 |
ataacctagcctcaaaattcaatccaatcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41365314 |
ataacctagcctcaaaattcaatccaatcc |
41365343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University