View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11541_high_25 (Length: 249)

Name: NF11541_high_25
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11541_high_25
NF11541_high_25
[»] chr7 (5 HSPs)
chr7 (7-150)||(1552510-1552652)
chr7 (7-75)||(1104079-1104147)
chr7 (7-75)||(1543265-1543333)
chr7 (141-171)||(1104205-1104235)
chr7 (141-171)||(1543177-1543207)
[»] chr8 (2 HSPs)
chr8 (143-199)||(18755714-18755769)
chr8 (21-75)||(18755809-18755863)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 1552652 - 1552510
Alignment:
Q  7 tgagaagaattattgcagagcttaatttgacataaagttattgaacgtaaatagaggggtagatgcttcaaagcttgtttttcatgtccacacataaaat 106  Q
    ||||||||||||||| |||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||||    
T  1552652 tgagaagaattattgaagagcttaatttgacataaagttgatgaacgtaaatggaggggtagatgcttcaaagcttgtttttcacgtccgcacat-aaat 1552554  T
Q  107 tgttaaaagcataaagttgttcaaagcttgtttttcttataaat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1552553 tgttaaaagcataaagttgttcaaagcttgtttttcttataaat 1552510  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 1104079 - 1104147
Alignment:
Q  7 tgagaagaattattgcagagcttaatttgacataaagttattgaacgtaaatagaggggtagatgcttc 75  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  1104079 tgagaagaattattgaagaggttaatttgacataaagttgttgaacgtaaatggaggggtagatgcttc 1104147  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 1543333 - 1543265
Alignment:
Q  7 tgagaagaattattgcagagcttaatttgacataaagttattgaacgtaaatagaggggtagatgcttc 75  Q
    ||||||||||||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  1543333 tgagaagaattattgaagaggttaatttgacataaagttgttgaacgtaaatggaggggtagatgcttc 1543265  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 1104205 - 1104235
Alignment:
Q  141 tcttataaatgaatcaaattagcgtgtgaca 171  Q
    |||||||||||||||||||||||||||||||    
T  1104205 tcttataaatgaatcaaattagcgtgtgaca 1104235  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 1543207 - 1543177
Alignment:
Q  141 tcttataaatgaatcaaattagcgtgtgaca 171  Q
    |||||||||||||||||||||||||||||||    
T  1543207 tcttataaatgaatcaaattagcgtgtgaca 1543177  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 18755769 - 18755714
Alignment:
Q  143 ttataaatgaatcaaattagcgtgtgacaatgagactgaccgacgaggtcacacaac 199  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  18755769 ttataaatgaatcaaattagcgtgtgagaatgagagtga-cgacgaggtcacacaac 18755714  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 18755863 - 18755809
Alignment:
Q  21 gcagagcttaatttgacataaagttattgaacgtaaatagaggggtagatgcttc 75  Q
    |||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  18755863 gcagggcttaattggacataaagttgttgatcgtaaatagaggggtagatgcttc 18755809  T

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