View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_high_7 (Length: 538)
Name: NF11541_high_7
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 41081188 - 41080676
Alignment:
| Q |
18 |
tcaattgcctaagccaccatagataatgaaagaccaatctaaagttagttttaacattaggcatgagtagaaccatattaattggtaagggatatgctat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41081188 |
tcaattgcctaagccaccatagataatgaaagaccaatctaaagttagttttaacattaggcatgagtagaaccatatt----ggtaagggatatgctat |
41081093 |
T |
|
| Q |
118 |
gattttgattggttaaaatgccatttcctgtcaagaaacgacataacacccctacttatcatactccaccataatataaaatagaagcagctgtcttata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41081092 |
gattttgattggttaaaatgccatttcctgtcaagaaacgacataacccccctacttatcatactccaccataatataaaatagaagcagctgtcttata |
41080993 |
T |
|
| Q |
218 |
tatgcagattatacaaaataaattacctaaaatattaaccgcagatgcctcaaaatatgcagattacacacaactagcataatactgtatattggcataa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080992 |
tatgcagattatacaaaataaattacctaaaatattaaccgcagatgcctcaaaatatgcagattacacacaactagcataatactgtatattggcataa |
41080893 |
T |
|
| Q |
318 |
gagactccacaaatctccttgccaccatgatatcctctgaataaccatctccttgctcacaatcaatcgactaaagaatgaaatgcaaacttctatgaat |
417 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41080892 |
gagactccacaaatctcattgccaccatgatatcctctgaataaccatctccttgctcacaatcaattgactaaagaatgaaatgcaaacttctatgaat |
41080793 |
T |
|
| Q |
418 |
tacaagcctcataaaaatgctgcttcttgnnnnnnntttaagcatgtacaatacaaatctaagaccggtccccttcagttccagattcagaatggaggat |
517 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080792 |
tacaagcctcataaaaatgctgcttcttg-aaaaaatttaagcatgtacaatacaaatctaagaccggtccccttcagttccagattcagaatggaggat |
41080694 |
T |
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| Q |
518 |
cggtgctcattattctct |
535 |
Q |
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|||||||||||||||||| |
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| T |
41080693 |
cggtgctcattattctct |
41080676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 41089198 - 41088931
Alignment:
| Q |
18 |
tcaattgcctaagccaccatagataatgaaagaccaatctaaagttagttttaacattaggcatgagtagaaccatattaattggtaagggatatgctat |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||| | ||||||||||| ||||| |
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| T |
41089198 |
tcaattgcctaagccaccatagataacgaaagaccaatctaaaggtagttttaacattatgcatgactagaaccataat----ggtaagggataagctat |
41089103 |
T |
|
| Q |
118 |
gattttgattggttaaaatgccatttcctgtcaagaaacgacataacacccctacttatcatactccaccataatataaaatagaagcagctgtcttata |
217 |
Q |
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||||| |||| |||||||||||||||||||||||||||| |||| | ||||| ||||||| |||||||||| |||||||||||||||||||| || ||| |
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| T |
41089102 |
gatttagattcgttaaaatgccatttcctgtcaagaaaccacatcagaccccggcttatcaaactccaccatgatataaaatagaagcagctgcctcata |
41089003 |
T |
|
| Q |
218 |
tatgcagattatacaaaataaattacctaaaatattaaccgcagatgcctcaaaatatgcagattacacaca |
289 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||||||| |
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| T |
41089002 |
tatgtagattatacaaaataaattacctagaatattaacagtagctgcctcaaaatatgcagattacacaca |
41088931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 41103563 - 41103396
Alignment:
| Q |
28 |
aagccaccatagataatgaaagaccaatctaaagttagttttaacattaggcatgagtagaaccatattaattggtaagggatatgctatgattttgatt |
127 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||| |||||| ||||||| |||||||||||| ||| |||||||| ||||| ||||||||||| ||| |
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| T |
41103563 |
aagccaccatagataacgaaaggccaatttaaaggtagtttcaacattatgcatgagtagaatcat----attggtaacggataagctatgattttaatt |
41103468 |
T |
|
| Q |
128 |
ggttaaaatgccatttcctgtcaagaaacgacataacacccctacttatcatactccaccataatataaaata |
200 |
Q |
| |
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|||||||||| ||||| |||||||||||| |||| | |||| ||||||| |||||||||| |||||||||| |
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| T |
41103467 |
ggttaaaatggcattt-ctgtcaagaaaccacatcagaccctggcttatcaaactccaccatgatataaaata |
41103396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 446
Target Start/End: Complemental strand, 41103310 - 41103167
Alignment:
| Q |
316 |
aagagactccacaaatctccttgccaccatgatatcctctgaataacc-------------atctccttgctcacaatcaatcgactaaagaatgaaatg |
402 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||| |||||||||| |||||| |||||||||||| | ||||||||||||||||| |
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| T |
41103310 |
aagagactccacaaatctacttgtcaccatgatatccactgaataacccttcattggaaccatctccctgctcacaatcacttgactaaagaatgaaatg |
41103211 |
T |
|
| Q |
403 |
caaacttctatgaattacaagcctcataaaaatgctgcttcttg |
446 |
Q |
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|||||| ||| |||||||||| |||| |||||||| ||||||| |
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| T |
41103210 |
caaactgctacgaattacaagtctcacaaaaatgccacttcttg |
41103167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 1216677 - 1216630
Alignment:
| Q |
316 |
aagagactccacaaatctccttgccaccatgatatcctctgaataacc |
363 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
1216677 |
aagagactccacaaatctccttgccaccattatatccgttgaataacc |
1216630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 41088913 - 41088836
Alignment:
| Q |
289 |
aactagcataatactgtatattggcataaga----gactccacaaatctccttgccaccatgatatcctctgaataac |
362 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||| ||| |||||||||| |||||||||||||||||||||||| |
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| T |
41088913 |
aactagcataatactgcgaattggcacaagaaagagaccccataaatctccttaccaccatgatatcctctgaataac |
41088836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 434
Target Start/End: Complemental strand, 1216619 - 1216545
Alignment:
| Q |
360 |
aaccatctccttgctcacaatcaatcgactaaagaatgaaatgcaaacttctatgaattacaagcctcataaaaa |
434 |
Q |
| |
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|||| ||||| |||||||||||| | || |||||||| ||||||||| | ||| ||||||||| ||||| ||||| |
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| T |
1216619 |
aaccttctccctgctcacaatcacttgagtaaagaattaaatgcaaattgctacgaattacaatcctcacaaaaa |
1216545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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