View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_low_10 (Length: 502)
Name: NF11541_low_10
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 105 - 411
Target Start/End: Complemental strand, 40492217 - 40491914
Alignment:
| Q |
105 |
catttgtgacattgtagttgatcaatgtcactaactatatataatgtcacacaagtgctacctggatgtatatatttctttatggaaaataaaatagcat |
204 |
Q |
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| T |
40492217 |
catttgtgacattgtagttgatcaatgtcactaactata----atgtcacacaagtgctacctggatgtatatatttctttatggaaaataaaatagcat |
40492122 |
T |
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| Q |
205 |
aatagatattgattttgaataattaaataattttcatcccattgaaattcaaaaaccttgtgaaaaataagatgaaatagttcttcattaggtatgatgg |
304 |
Q |
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| T |
40492121 |
aatagatattgattttgaataattaaataattttcatcccattgaaattcaaaaaccttgtgaaaaataagatgaaatagttcttcattaggtatgctgg |
40492022 |
T |
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| Q |
305 |
tagtataagcggacgatacaaacacaaaccccatggaaaatgg-aaaatttttcacactagcaaaacaacattgcaaaagcaacctcgactacatgatga |
403 |
Q |
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| T |
40492021 |
tagtataagcggacgatacaaacacaaaccccatggaaaatggaaaaaaatttcacactagcaaaacaacattgcaaaagcaacctcgactacatgatga |
40491922 |
T |
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| Q |
404 |
acaacaag |
411 |
Q |
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| T |
40491921 |
acaacaag |
40491914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 163 - 410
Target Start/End: Complemental strand, 40481609 - 40481359
Alignment:
| Q |
163 |
tacctggatgtatatatttctttatggaaaataaaatagcataatagatattgattttgaataattaaataattttcatc---ccattgaaattcaaaaa |
259 |
Q |
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| T |
40481609 |
tacctgaatgtatatatttcattctggaaa-tgaaatagcata---gatattgattttgaataatcacataattttcatcatcccattgaaattgaaaaa |
40481514 |
T |
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| Q |
260 |
ccttgtgaaaaat-aagatgaaatagttcttcattaggtatgatggtagtataagcggacgatacaaacacaaaccccat---ggaaaatggaaaatttt |
355 |
Q |
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| T |
40481513 |
acttgtgaaaaattaagatgaaacatttattcattaggttagctggtaatataagtggatgatacaaatacaaaccccatcatgaaaaatgggaaatttt |
40481414 |
T |
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| Q |
356 |
tcacactagcaaaacaacattgcaaaagcaacctcgactacatgatgaacaacaa |
410 |
Q |
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| T |
40481413 |
tcactcaagtaaaacatcactgcaaaagtaagctcgactacataatgaacaacaa |
40481359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40492321 - 40492257
Alignment:
| Q |
1 |
tggataatatttggtgacattgtttgtggtggtgacattggtcaaccacaatgtaataaatggat |
65 |
Q |
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| T |
40492321 |
tggataatatttggtgacattgtttgtggtggtgatattggtcaaccacaatgtaataaatggat |
40492257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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