View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_low_11 (Length: 498)
Name: NF11541_low_11
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 52772141 - 52771674
Alignment:
| Q |
17 |
agaccaatagtttgatgtgaaaataattaaataaaaattggcacatggatgcatgcaggtgtgatatcaggagctcttctatatataaaagatgattttg |
116 |
Q |
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| T |
52772141 |
agaccaatagtttgatgtgaaaataattaaataaaaattggcacatggatgcatgcaggtgtgatatcaggagctcttctatatataaaagatgattttg |
52772042 |
T |
|
| Q |
117 |
aatccgttagagaaagtaacattctgcaggaaacaatagtcagcatggcaatagctggtgcaatagttggagcagcaacaggtggttggattaacgatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52772041 |
aatccgttagagaaagtaacattctgcaggaaacaatagtcagcatggcaatagctggtgcaatagttggagcagcaataggtggttggattaacgatgc |
52771942 |
T |
|
| Q |
217 |
ttatggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcataatcgga |
316 |
Q |
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| T |
52771941 |
ttacggacgaaagaaggcaactctcatcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcataatcgga |
52771842 |
T |
|
| Q |
317 |
cgccttcttgttggtttaggtgtcggcattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaatcagaggttcattagtcagta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771841 |
cgccttcttgttggtttaggtgtcggcattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaatcagaggttcattagtcagta |
52771742 |
T |
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| Q |
417 |
ctaattccctcatgatcaccagtggacaactcctttcctacatagttaacctcgcctttacgcgtgtc |
484 |
Q |
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| T |
52771741 |
ctaattccctcatgatcaccagtggacaactcctttcctacatagttaacctcgcctttacgcgtgtc |
52771674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 143 - 310
Target Start/End: Complemental strand, 52769076 - 52768909
Alignment:
| Q |
143 |
caggaaacaatagtcagcatggcaatagctggtgcaatagttggagcagcaacaggtggttggattaacgatgcttatggacgaaagaaggcaactctca |
242 |
Q |
| |
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||||||||||| |||||||||||| | ||||||||||| |||||||||||| |||||||||||| || ||| ||||||| ||||||||||||| ||| |
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| T |
52769076 |
caggaaacaattgtcagcatggcagtggctggtgcaattgttggagcagcagtaggtggttggatgaatgatcgttatggaagaaagaaggcaaccatca |
52768977 |
T |
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| Q |
243 |
tcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcata |
310 |
Q |
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| T |
52768976 |
ttgcagatgttatctttattctcggagcaattgtcatggctgctgcgccagatccttatattctcata |
52768909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 143 - 444
Target Start/End: Original strand, 390036 - 390337
Alignment:
| Q |
143 |
caggaaacaatagtcagcatggcaatagctggtgcaatagttggagcagcaacaggtggttggattaacgatgcttatggacgaaagaaggcaactctca |
242 |
Q |
| |
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||||||||||| || ||||||||||| ||||||||||| ||||| || ||| ||||||||| |||| || ||||||||| |||||||||| || ||| |
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| T |
390036 |
caggaaacaattgttagcatggcaattgctggtgcaattgttggtgcggcatttggtggttggcttaatgacgcttatggaagaaagaaggccacactct |
390135 |
T |
|
| Q |
243 |
tcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcataatcggacgccttcttgttggtttaggtgtcgg |
342 |
Q |
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| T |
390136 |
tagctgatgttatctttattctcggagcaattctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttctcgttggtttgggtgttgg |
390235 |
T |
|
| Q |
343 |
cattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaatcagaggttcattagtcagtactaattccctcatgatcaccagtgga |
442 |
Q |
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||| || ||||| || ||||| ||||||||||| |||| |||| || ||||||||||| ||||||||||| |||||| ||||||||||||| ||||| |
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| T |
390236 |
catagcttctgttactgctcctgtctacattgcagaagtcgcaccctctgaaatcagaggctcattagtcagcactaatgtcctcatgatcaccggtgga |
390335 |
T |
|
| Q |
443 |
ca |
444 |
Q |
| |
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|| |
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|
| T |
390336 |
ca |
390337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 405
Target Start/End: Complemental strand, 38014039 - 38013775
Alignment:
| Q |
141 |
tgcaggaaacaatagtcagcatggcaatagctggtgcaatagttggagcagcaacaggtggttggattaacgatgcttatggacgaaagaaggcaactct |
240 |
Q |
| |
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|||||||||| || || ||||||||| | | ||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| ||||||||||| || |
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| T |
38014039 |
tgcaggaaactattgtaagcatggcattggttggtgcaattattggagcagcaacaggtggctggattaatgatgcttttggacgtaagaaggcaacact |
38013940 |
T |
|
| Q |
241 |
catcgcggatgtcatcttcattattggagcaattggtatggctgccgcgcctgatccttacattctcataatcggacgccttcttgttggtttaggtgtc |
340 |
Q |
| |
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| || ||||| |||| | | ||||| || ||| ||||||| ||||||| ||| | || |||||||| | || || ||||||||||| | ||||| |
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| T |
38013939 |
tagtgctgatgttgtctttactcttggatcagttgttatggcttccgcgccagatgcatatgttctcatacttggccgtcttcttgttggcattggtgtg |
38013840 |
T |
|
| Q |
341 |
ggcattgcctctgtcaccgctcccgtctacattgccgaagcatcaccttccgaaatcagaggttc |
405 |
Q |
| |
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|| | ||||||||||| ||||| || || ||||| ||| | ||||| || ||||| || ||||| |
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| T |
38013839 |
ggtgtagcctctgtcacggctcctgtatatattgcagaatcctcaccatcagaaataaggggttc |
38013775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 38014192 - 38014144
Alignment:
| Q |
69 |
atgcaggtgtgatatcaggagctcttctatatataaaagatgattttga |
117 |
Q |
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|||||||||| || || || |||||||||||||| |||||||||||||| |
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| T |
38014192 |
atgcaggtgttatttctggtgctcttctatatattaaagatgattttga |
38014144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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