View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11541_low_12 (Length: 458)

Name: NF11541_low_12
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11541_low_12
NF11541_low_12
[»] chr2 (4 HSPs)
chr2 (1-313)||(6256720-6257031)
chr2 (226-307)||(12328764-12328845)
chr2 (379-440)||(6257097-6257158)
chr2 (400-440)||(12328933-12328973)
[»] chr4 (10 HSPs)
chr4 (8-313)||(51206831-51207136)
chr4 (66-313)||(43429303-43429550)
chr4 (126-313)||(21438276-21438463)
chr4 (379-440)||(43429139-43429200)
chr4 (383-440)||(21438531-21438588)
chr4 (379-440)||(51206704-51206765)
chr4 (8-65)||(43429510-43429567)
chr4 (126-186)||(31137546-31137607)
chr4 (227-291)||(2566024-2566088)
chr4 (235-270)||(31137628-31137663)
[»] chr3 (2 HSPs)
chr3 (207-313)||(54523225-54523330)
chr3 (383-440)||(54523099-54523156)
[»] chr1 (4 HSPs)
chr1 (226-307)||(4437170-4437251)
chr1 (226-307)||(25668968-25669049)
chr1 (400-440)||(4437042-4437082)
chr1 (400-440)||(25668840-25668880)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 6256720 - 6257031
Alignment:
Q  1 ataacaagagtgatacttggtaactgaaattttgcattcaccaaaataagttactgatacaaaattaaaattctacattcaccaaaataagttaatgata 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||    
T  6256720 ataacaggagtgatacttggtaactgaaattttgcattcaccaaaataagttactgata-aaaattaaaattctgcattcaccaaaataagttactgata 6256818  T
Q  101 caaaataagctagcatgatcacaaattgaaattatgcattacaattttaagttattgatacaaaaatatgccagcatgatcacaaaactaaactttcaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6256819 caaaataagctagcatgatcacaaattgaaattatgcattacaattttaagttattgatacaaaaatatgccagcatgatcacaaaactaaactttcaaa 6256918  T
Q  201 tcatatcataaagaacaggaagtgtcattcattcttctatattattcatctggtttgtctaacttccttcatccttcttctatgccattcttccaatcct 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6256919 tcatatcataaagaacaggaagtgtcattcattcttctatgttattcatctggtttgtctaacttccttcatccttcttctatgccattcttccaatcct 6257018  T
Q  301 aaaaacatcaagt 313  Q
    |||||||||||||    
T  6257019 aaaaacatcaagt 6257031  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 307
Target Start/End: Original strand, 12328764 - 12328845
Alignment:
Q  226 cattcattcttctatattattcatctggtttgtctaacttccttcatccttcttctatgccattcttccaatcctaaaaaca 307  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12328764 cattcattcttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattcttccaatcctaaaaaca 12328845  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 6257097 - 6257158
Alignment:
Q  379 taagtacattttgaaagggacttcttaccaaaattatggagatgatctttggggacaattgc 440  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  6257097 taagtacattttgaaagggactttttaccaaaattatggagatgatctttggggacagttgc 6257158  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 12328933 - 12328973
Alignment:
Q  400 ttcttaccaaaattatggagatgatctttggggacaattgc 440  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12328933 ttcttaccaaaattatggagatgatctttggggacaattgc 12328973  T

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Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 51207136 - 51206831
Alignment:
Q  8 gagtgatacttggtaactgaaattttgcattcaccaaaataagttactgatacaaaattaaaattctacattcaccaaaataagttaatgatacaaaata 107  Q
    |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  51207136 gagtgatacttggtaactgaaattctacattcaccaaaataaattactgatacaaaattaaaattttgcattcaccaaaataagttactgatacaaaata 51207037  T
Q  108 agctagcatgatcacaaattgaaattatgcattacaattttaagttattgatacaaaaatatgccagcatgatcacaaaactaaactttcaaatcatatc 207  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  51207036 agctagcatgatcacaaattgtaattctgcattacaattttaagttattgatacaaaaatatgcaagtatgatcacaaaactaaactttcaaatcatatc 51206937  T
Q  208 ataaagaacaggaagtgtcattcattcttctatattattcatctggtttgtctaacttccttcatccttcttctatgccattcttccaatcctaaaaaca 307  Q
    |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51206936 ataaagaataagaagtgtcattcattcttctatgttattcatctggtttgtctaacttccttcatcctttttctatgccattcttccaatcctaaaaaca 51206837  T
Q  308 tcaagt 313  Q
    ||||||    
T  51206836 tcaagt 51206831  T

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Target: chr4; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 66 - 313
Target Start/End: Complemental strand, 43429550 - 43429303
Alignment:
Q  66 taaaattctacattcaccaaaataagttaatgatacaaaataagctagcatgatcacaaattgaaattatgcattacaattttaagttattgatacaaaa 165  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43429550 taaaattctgcattcaccaaaataagttactgatacaaaataagctagcatgatcacaaattgaaattctgcattacaattttaagttattgatacaaaa 43429451  T
Q  166 atatgccagcatgatcacaaaactaaactttcaaatcatatcataaagaacaggaagtgtcattcattcttctatattattcatctggtttgtctaactt 265  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43429450 atatgctagcatgatcacaaaactaaactttcaaatcatatcataaagaacaggaagtgtcattcattcttctatgttattcatctggtttgtctaactt 43429351  T
Q  266 ccttcatccttcttctatgccattcttccaatcctaaaaacatcaagt 313  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43429350 ccttcatccttcttctatgtcattcttccaatcctaaaaacatcaagt 43429303  T

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Target: chr4; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 126 - 313
Target Start/End: Original strand, 21438276 - 21438463
Alignment:
Q  126 ttgaaattatgcatt-acaattttaagttattgatacaaaaatatgccagcatgatcacaaaactaaactttcaaatcatatcataaagaacaggaagtg 224  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  21438276 ttgaaattctgcattcacaattttaagttactgatacaaaaatatgccaacatgatcacaaaactaaactttcaaatcatttcataaagaacatgaagtg 21438375  T
Q  225 tcattcattcttctatattattcatctggtttgtctaacttccttcatccttcttctatgccattcttccaatcctaaaaacatcaagt 313  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21438376 tcattcattcttctatgttattcatctggtttgtctaacttccttcatccttcttctatgccattcttccaatcct-aaaacatcaagt 21438463  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 43429200 - 43429139
Alignment:
Q  379 taagtacattttgaaagggacttcttaccaaaattatggagatgatctttggggacaattgc 440  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43429200 taagtacattttgaaaggggcttcttaccaaaattatggagatgatctttggggacaattgc 43429139  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 21438531 - 21438588
Alignment:
Q  383 tacattttgaaagggacttcttaccaaaattatggagatgatctttggggacaattgc 440  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21438531 tacattttgaaaggggcttcttaccaaaattatggagatgatctttggggacaattgc 21438588  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 51206765 - 51206704
Alignment:
Q  379 taagtacattttgaaagggacttcttaccaaaattatggagatgatctttggggacaattgc 440  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  51206765 taagtacattttgaaaggggcttcttaccaaaataatggagatgatctttggggacaattgc 51206704  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 43429567 - 43429510
Alignment:
Q  8 gagtgatacttggtaactgaaattttgcattcaccaaaataagttactgatacaaaat 65  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  43429567 gagtgatacttggtaactaaaattctgcattcaccaaaataagttactgatacaaaat 43429510  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 31137546 - 31137607
Alignment:
Q  126 ttgaaattatgcatt-acaattttaagttattgatacaaaaatatgccagcatgatcacaaa 186  Q
    |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  31137546 ttgaaattctgcattcacaattttaagttactgatacaaaaatatgccagcatgatcacaaa 31137607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 2566024 - 2566088
Alignment:
Q  227 attcattcttctatattattcatctggtttgtctaacttccttcatccttcttctatgccattct 291  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||||  |||||| | ||||||    
T  2566024 attcatgcttctatgttattcatcttgtttgtctaacttccttcatccgccttctacgtcattct 2566088  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 270
Target Start/End: Original strand, 31137628 - 31137663
Alignment:
Q  235 ttctatattattcatctggtttgtctaacttccttc 270  Q
    |||||| |||||||||||||||||||||||||||||    
T  31137628 ttctatgttattcatctggtttgtctaacttccttc 31137663  T

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Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 207 - 313
Target Start/End: Complemental strand, 54523330 - 54523225
Alignment:
Q  207 cataaagaacaggaagtgtcattcattcttctatattattcatctggtttgtctaacttccttcatccttcttctatgccattcttccaatcctaaaaac 306  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  54523330 cataaagaacatgaagtgtcattcattcttctatgttattcatctggtttgtctaactttcttcatccttcttctatgccattcttccaatcct-aaaac 54523232  T
Q  307 atcaagt 313  Q
    |||||||    
T  54523231 atcaagt 54523225  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 54523156 - 54523099
Alignment:
Q  383 tacattttgaaagggacttcttaccaaaattatggagatgatctttggggacaattgc 440  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54523156 tacattttgaaaggggcttcttaccaaaattatggagatgatctttggggacaattgc 54523099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 4437251 - 4437170
Alignment:
Q  226 cattcattcttctatattattcatctggtttgtctaacttccttcatccttcttctatgccattcttccaatcctaaaaaca 307  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4437251 cattcattcttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattcttccaatcctaaaaaca 4437170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 25669049 - 25668968
Alignment:
Q  226 cattcattcttctatattattcatctggtttgtctaacttccttcatccttcttctatgccattcttccaatcctaaaaaca 307  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25669049 cattcattcttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattcttccaatcctaaaaaca 25668968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 4437082 - 4437042
Alignment:
Q  400 ttcttaccaaaattatggagatgatctttggggacaattgc 440  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4437082 ttcttaccaaaattatggagatgatctttggggacaattgc 4437042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 400 - 440
Target Start/End: Complemental strand, 25668880 - 25668840
Alignment:
Q  400 ttcttaccaaaattatggagatgatctttggggacaattgc 440  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25668880 ttcttaccaaaattatggagatgatctttggggacaattgc 25668840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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