View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_low_13 (Length: 380)
Name: NF11541_low_13
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 25430834 - 25430549
Alignment:
| Q |
9 |
aacgagtgcattgtgctgaggagtatatcaagttgcgacttcatgtattattccg-tggctcgtgcaataagctgcaaattcttttaaagtgtattcttc |
107 |
Q |
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| T |
25430834 |
aacgagtgcattgtgctgaggagtatatcaagttgcgacttcatgtattattcccctggctcgtgcaataagctgcaaattcttttaaagtgtattcttc |
25430735 |
T |
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| Q |
108 |
acctcaatttgtcatgaaaatatgaagttgcttaccatattgtgttctcaactaatgctttaaattctttgtaaatttctaaagcattactctttgatcc |
207 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25430734 |
acctcaatttgtcatgaaaatctgaagttgcttaccatattgtgttctcaactaatgctttaaattctttgtaaatttctaaagcattactctttgattc |
25430635 |
T |
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| Q |
208 |
tatcagacatagccacaacatcttggaatattcatcaacaaaagtgataaagtgcatgttaccactatacgtaggtacctctatag |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25430634 |
tatcagacatagccacaacatcttggaatattcatcaacaaaagtgataaagtgcatgttaccactatacgtaggtacctctatag |
25430549 |
T |
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