View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_low_18 (Length: 347)
Name: NF11541_low_18
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 337
Target Start/End: Original strand, 11984941 - 11985256
Alignment:
| Q |
22 |
acatcaaccacattcggccatgcatctatctacaatattatacatgtatttatcacgatggcctaccgtgannnnnnnnnnnnnnnncttctataaaatt |
121 |
Q |
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| T |
11984941 |
acatcaaccacattcggccatgcatctctctacaatagtatacatatattcatcacgatggcctatcgtgatttttttattttttttcttctgtaaaatc |
11985040 |
T |
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| Q |
122 |
acagtagatcatcatgattctgatataccgattatgataccaaacatatcgaataaagtttgtaaggcaatcacaattgtcaccacgacccgaataaaat |
221 |
Q |
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| T |
11985041 |
acagtagatcatcataattctaatataccgattatgataccaaacatatcgaataaagtttgcaaggcaatcacaattgtcaccacgaccagaataaaat |
11985140 |
T |
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| Q |
222 |
acttaagcaaaataaagtttgttggtttagttagttacctttctgcaattgatcccatctttagttgaaagttgaatagagagagaataatgcttcactt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11985141 |
acttaagcaaaataaagtttgttggtttagttagttacctttctgcaattgatcccatctttagttgaaagttgaatagagagagaataatgcttcactt |
11985240 |
T |
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| Q |
322 |
cagctatagttctgtg |
337 |
Q |
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||||||||| |||||| |
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| T |
11985241 |
cagctatagctctgtg |
11985256 |
T |
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