View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_low_22 (Length: 284)
Name: NF11541_low_22
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 11984763 - 11984508
Alignment:
| Q |
15 |
atgaaaaattcttcaatttaatcttgaacatctttataacacatcataattatatagtttaagaactatatagagagggtaacattttaaggactaaatt |
114 |
Q |
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| T |
11984763 |
atgaaaaattcttcaatttaatcttgaacatcttaataacacatcataattatatagtttaagaactatatagagagggtaacattttaaggactaaatt |
11984664 |
T |
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| Q |
115 |
gatagtttcttgtaacaaattaactagtatcaaaccatttgggttgaatttgtttgcaggattgcagtggtgactggagcaaacaaaggaattgggtttg |
214 |
Q |
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| T |
11984663 |
gatagtttcttttaacaaattaactagtatcaaaccatttgggttgaatttgtttgcaggattgcagtggtgactggagcaaacaaaggaattgggtttg |
11984564 |
T |
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| Q |
215 |
agatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagat |
270 |
Q |
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| T |
11984563 |
agatagttaagcagttagcttcagctggaatcaaagttgtgcttacagcaagagat |
11984508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 12014660 - 12014567
Alignment:
| Q |
177 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagat |
270 |
Q |
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| T |
12014660 |
tgcagtggtgactggagcaaacaaagggattggatttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagat |
12014567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 11975169 - 11975076
Alignment:
| Q |
177 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagat |
270 |
Q |
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| T |
11975169 |
tgcagtggtgactggagcaaacaaaggaattgggtttgaaatagttaagcaattagcttcagctggaatcaaagtggtgcttacagcaagagat |
11975076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 270
Target Start/End: Complemental strand, 11980275 - 11980151
Alignment:
| Q |
146 |
aaaccatttgggttgaatttgtttgcaggattgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaat |
245 |
Q |
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| T |
11980275 |
aaaccatgtgggttgtgtttgttgccaggattgcagtggtgacaggatcaaacaaaggaattggattagagatagtaaggcaattagcttcagctggaat |
11980176 |
T |
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| Q |
246 |
caaagtggtgcttactgcaagagat |
270 |
Q |
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| T |
11980175 |
caaagtggtgcttacagcaagagat |
11980151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 11992108 - 11992015
Alignment:
| Q |
177 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagat |
270 |
Q |
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| T |
11992108 |
tgcagtggtgacaggtgcaaacaaaggaattgggttagagatagtaaagcagttagcttcagctgtaatcaaagtggtgcttacatcaagagat |
11992015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 12010085 - 12009992
Alignment:
| Q |
177 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagat |
270 |
Q |
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| T |
12010085 |
tgcagtggtgacaggagcaaacaaaggaattgggttagagatagttaaacagttagcttcagctagaatcaaagtggtgctcacatcaagagat |
12009992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 12004993 - 12004900
Alignment:
| Q |
177 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagat |
270 |
Q |
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| T |
12004993 |
tgcagtggtgactggatcgaacaaaggaattggattagagatagtaaggcaattagcttcagctggaatcaaagtggtgcttacagcaagagat |
12004900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 11999775 - 11999682
Alignment:
| Q |
177 |
tgcagtggtgactggagcaaacaaaggaattgggtttgagatagttaagcagttagcttcagctggaatcaaagtggtgcttactgcaagagat |
270 |
Q |
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| T |
11999775 |
tgcagtggtgacaggatcaaacaaaggaattggatttgagatagtaaggcagttagcttcagatggaatcaaagttgtgctgacagcaagagat |
11999682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 43494722 - 43494684
Alignment:
| Q |
181 |
gtggtgactggagcaaacaaaggaattgggtttgagata |
219 |
Q |
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| T |
43494722 |
gtggtgacaggagcaaacaaaggaattggatttgagata |
43494684 |
T |
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