View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_low_24 (Length: 255)
Name: NF11541_low_24
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 245
Target Start/End: Complemental strand, 55169227 - 55169005
Alignment:
| Q |
22 |
acgccccgacctcaaacgtggaaatttcacccaacaagaagatcaactcatcataaaactccacactctcctcggtaacaagtaagctacactatcgttc |
121 |
Q |
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| T |
55169227 |
acgccccgacctcaaacgtggaaatttcacccaacaagaagatcaactcatcataaaactccacactctcctcggtaacaagtaagctacactatcgttc |
55169128 |
T |
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| Q |
122 |
ttgagtatttttagactttaccccaatttgatctttcgtaatttccttgcaactagtcttggatnnnnnnnttatatccaaactagtcacttagattttt |
221 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
55169127 |
ttgagtatttttagacttta-cccaatttgatctttcgtaatttccttgcaactagtcttatataaaaaaattatatccaaactagtcacttagattttt |
55169029 |
T |
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| Q |
222 |
atatagggtcgtattaatcctttg |
245 |
Q |
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||||||||||| |||||||||||| |
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| T |
55169028 |
atatagggtcgcattaatcctttg |
55169005 |
T |
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