View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_low_29 (Length: 239)
Name: NF11541_low_29
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_low_29 |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 2188007 - 2188207
Alignment:
| Q |
40 |
catattattctgagggttacttttgtcattcnnnnnnn-ctgatcccttcttcacctttctgtccaatctagagagaaaggttttgcatgtgggtcccag |
138 |
Q |
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| T |
2188007 |
catattattctaagggttacttttgtcattccaaaaaaactgatcccttcttcacctttctatccaatctagagagaaaggttttgcatgtgggtcccag |
2188106 |
T |
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| Q |
139 |
ttaaaacattttatcctctccctttttatggtggagccaaacaatggaaacaagatctatccactcactttcttttcgtctttcaatctttccatagaac |
238 |
Q |
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| T |
2188107 |
ttaaaacattttatcctctccctttttatggtggtgccaaacaatggaaacaagatctatccactcactttctttccatctttcaatctttccatagaac |
2188206 |
T |
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| Q |
239 |
c |
239 |
Q |
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| T |
2188207 |
c |
2188207 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 39965935 - 39965982
Alignment:
| Q |
192 |
gatctatccactcactttcttttcgtctttcaatctttccatagaacc |
239 |
Q |
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| T |
39965935 |
gatccatccactcactttctttccctctttcaatctttccattgaacc |
39965982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 21432158 - 21432384
Alignment:
| Q |
16 |
caacactcaacagtgcatattattcatatt-attctgagggttacttttgtcattcnnnnnnnct-gatcccttcttcacctttctgtccaatctagaga |
113 |
Q |
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| T |
21432158 |
caacactcaacggtgcatattattcatattgattcagagggttacttttgtcattccaaaaaaattgatcccttcttcacctttccgtccaatctagagg |
21432257 |
T |
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| Q |
114 |
g-aaaggttttgcatgtgggtcccagttaaaacattttatcctctccctttttatggtggagccaaacaatggaaacaagatctatccactcactttctt |
212 |
Q |
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| |||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
21432258 |
ggaaaggttttgcatgtgggtcccggttaaaacattctatccactcccttttgatggtggtgccaaacaatggaaacaagatccatccactcactttctt |
21432357 |
T |
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| Q |
213 |
ttcgtctttcaatctttccatagaacc |
239 |
Q |
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| | |||| |||||||||||||||||| |
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| T |
21432358 |
tccctcttccaatctttccatagaacc |
21432384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 44185479 - 44185533
Alignment:
| Q |
185 |
gaaacaagatctatccactcactttcttttcgtctttcaatctttccatagaacc |
239 |
Q |
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||||||||||| ||||||||||||||||| | |||| |||||||||||||||||| |
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| T |
44185479 |
gaaacaagatccatccactcactttctttccctcttccaatctttccatagaacc |
44185533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 30861374 - 30861498
Alignment:
| Q |
115 |
aaaggttttgcatgtgggtcccagttaaaacattttatcctctccctttttatggtggagccaaacaatggaaacaagatctatccactcactttctttt |
214 |
Q |
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||||||||||| ||||| |||||| |||| ||| | | ||| |||| ||| ||| | ||||||| || |||| | ||||||||||||| |||||||| |
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| T |
30861374 |
aaaggttttgcttgtggatcccagcaaaaagattcttttctccccctctttgcggtagtgccaaaccatagaaagtaaatctatccactcattttctttt |
30861473 |
T |
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| Q |
215 |
cgtctttcaatctttccatagaacc |
239 |
Q |
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| T |
30861474 |
ccactttcaatctttctatagaacc |
30861498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 53849046 - 53848988
Alignment:
| Q |
175 |
ccaaacaatggaaacaagatctatccactcactttcttttcgtctttcaatctttccat |
233 |
Q |
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| T |
53849046 |
ccaaacaatggaaagaagatctttccacaatctttcttttcctcttttaatctttccat |
53848988 |
T |
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