View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11541_low_3 (Length: 791)

Name: NF11541_low_3
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11541_low_3
NF11541_low_3
[»] chr3 (10 HSPs)
chr3 (19-750)||(48838988-48839715)
chr3 (661-740)||(50905133-50905217)
chr3 (241-298)||(50905652-50905709)
chr3 (235-331)||(38043197-38043293)
chr3 (231-290)||(55087241-55087300)
chr3 (753-791)||(7975430-7975468)
chr3 (753-791)||(30311318-30311356)
chr3 (601-633)||(38043475-38043507)
chr3 (597-637)||(50905325-50905365)
chr3 (252-314)||(50914400-50914461)
[»] chr2 (4 HSPs)
chr2 (409-563)||(3070952-3071098)
chr2 (673-740)||(3073292-3073359)
chr2 (250-314)||(3071225-3071289)
chr2 (585-627)||(3073169-3073211)
[»] chr4 (4 HSPs)
chr4 (673-740)||(17970022-17970089)
chr4 (585-627)||(17969899-17969941)
chr4 (746-791)||(4249182-4249227)
chr4 (753-790)||(27965537-27965574)
[»] chr1 (3 HSPs)
chr1 (746-791)||(2799867-2799912)
chr1 (753-791)||(8177208-8177246)
chr1 (753-791)||(52336800-52336838)


Alignment Details
Target: chr3 (Bit Score: 687; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 19 - 750
Target Start/End: Complemental strand, 48839715 - 48838988
Alignment:
Q  19 aatagtctgatacttaaaagcagcgataagttctcaaactagaggaaaccaaaacacaaatatgaaacgttaaaatacaactccttcccctcaatcgtca 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48839715 aatagtctgatacttaaaagcagtgataagttctcaaactagaggaaaccaaaacacaaatatgaaacgttaaaatacaactccttcccctcaatcgtca 48839616  T
Q  119 atagagtttcatgagtagaggttctactagctaattgttcttatatgcagaaaacaaatcaccgaacaacccttatcagcgcaagtaaaaattttgggct 218  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  48839615 atagagttccatgagtagaggttctactagctaattgttcttatatgcagaaaacaaatcaccgaacaacccttatccgcgcaagttaaaattttgggct 48839516  T
Q  219 atagtccacctcataatcatgccaaagcagctgttgctagactttcttcgaaagactgcaattatttcaaacaaaatatacaggactgttgaaattaaga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48839515 atagtccacctcataatcatgccaaagcagctgttgctagactttcttcgatagactgcaattatttcaaacaaaatatacaggactgttgaaattaaga 48839416  T
Q  319 atataattttcagcatatccagtatttctgctacttgtggtttaaaacatgtactgttatcttctgactactgacaaaaccctcagtacaggttccctgc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48839415 atataattttcagcatatccagtatttctgctacttgtggtttaaaacatgtactattatcttctgactactgacaaaaccctcagtacaggttccctgc 48839316  T
Q  419 tgcctcctaacatttataatttgtagccaactaaccattatctaccttagagtccacactaacaagatattctttggtagctagctagctagctatgcat 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||    
T  48839315 tgcctcctaacatttataatttgtagccaactaaccattatctaccttagagtccacactaacaagatattctttggtagctagcta----gctatgcat 48839220  T
Q  519 cggcattgaaccgagttatcaatataaagagaaaatgtgacatgtctacaaaaaatatgagtatccataaatcaagcattaagttaaacctagccatctc 618  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48839219 cggcattgaaccgagttatcaatataaagagaacatgtgacatgtctacaaaaaatatgagtatccataaatcaagcattaagttaaacctagccatctc 48839120  T
Q  619 atttgacttccaagtgggttatcaacaggcaagatcatatgatccctcatctcatggagcccgtcttttaataataatttcttaaagaaattgatttgaa 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48839119 atttgacttccaagtgggttatcaacaggcaagatcatatgatccctcatctcatggagcccgtcttttaataataatttcttaaagaaattgatttgaa 48839020  T
Q  719 gaaactcttgaagactataaatgcacaacttt 750  Q
    ||||||||||||||||||||||||||||||||    
T  48839019 gaaactcttgaagactataaatgcacaacttt 48838988  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 661 - 740
Target Start/End: Complemental strand, 50905217 - 50905133
Alignment:
Q  661 tccctcatctcatggagcccgtcttttaataataattt-----cttaaagaaattgatttgaagaaactcttgaagactataaat 740  Q
    |||||||||||||||||||| || ||||| ||||||||     || |||||||| ||||||||||||||||||||||||||||||    
T  50905217 tccctcatctcatggagcccatcctttaacaataatttaatttctcaaagaaatggatttgaagaaactcttgaagactataaat 50905133  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 50905709 - 50905652
Alignment:
Q  241 caaagcagctgttgctagactttcttcgaaagactgcaattatttcaaacaaaatata 298  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||| |||| |||||||    
T  50905709 caaagcagttgttcctagactttcttcaaaagactgcaattatttaaaacgaaatata 50905652  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 331
Target Start/End: Original strand, 38043197 - 38043293
Alignment:
Q  235 tcatgccaaagcagctgttgctagactttcttcgaaagactgcaattatttcaaacaaaatatacaggactgttgaaattaagaatataattttcag 331  Q
    ||||| |||||||| |||| || || ||||||| ||||||| ||||||||| |||| ||||||| |||  |||||||||||| |||  |||||||||    
T  38043197 tcatgtcaaagcagttgttactggaatttcttcaaaagactacaattatttaaaacgaaatatataggtatgttgaaattaaaaattcaattttcag 38043293  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 55087241 - 55087300
Alignment:
Q  231 ataatcatgccaaagcagctgttgctagactttcttcgaaagactgcaattatttcaaac 290  Q
    ||||||||| |||||||| ||||||||||| |||||| |||||||||| |||||| ||||    
T  55087241 ataatcatgtcaaagcagttgttgctagacattcttcaaaagactgcacttatttaaaac 55087300  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 753 - 791
Target Start/End: Original strand, 7975430 - 7975468
Alignment:
Q  753 ttggcctagcggtataggcttgggatctgggagtgtgct 791  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  7975430 ttggcctagtggtataggcttgggatctgggagtgtgct 7975468  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 753 - 791
Target Start/End: Original strand, 30311318 - 30311356
Alignment:
Q  753 ttggcctagcggtataggcttgggatctgggagtgtgct 791  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  30311318 ttggcctagtggtataggcttgggatctgggagtgtgct 30311356  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 601 - 633
Target Start/End: Original strand, 38043475 - 38043507
Alignment:
Q  601 gttaaacctagccatctcatttgacttccaagt 633  Q
    |||||||||||||||||||||||||||||||||    
T  38043475 gttaaacctagccatctcatttgacttccaagt 38043507  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 597 - 637
Target Start/End: Complemental strand, 50905365 - 50905325
Alignment:
Q  597 ttaagttaaacctagccatctcatttgacttccaagtgggt 637  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  50905365 ttaatttaaatctagccatctcatttgacttccaagtgggt 50905325  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 50914400 - 50914461
Alignment:
Q  252 ttgctagactttcttcgaaagactgcaattatttcaaacaaaatatacaggactgttgaaatt 314  Q
    ||||| ||||||| || ||||||||||||||||| |||| ||||||| ||||| |||||||||    
T  50914400 ttgcttgactttcctcaaaagactgcaattattttaaactaaatata-aggaccgttgaaatt 50914461  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 409 - 563
Target Start/End: Complemental strand, 3071098 - 3070952
Alignment:
Q  409 ggttccctgctgcctcctaacatttataatttgtagccaactaaccattatctaccttagagtccacactaacaagatattctttggtagctagctagct 508  Q
    ||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||| | |||| | |||| | | | |||||||||||           
T  3071098 ggttccctgttgcctcctaacatttatgatttgtagccaacttaccattatctgccttagaatgcacattgacaatagaatttttggtagcta------- 3071006  T
Q  509 agctatgcatcggcattgaaccgagttatcaatataaagagaaaatgtgacatgt 563  Q
     ||||||||| |||||||||| | |||| |||||| |||||| ||||||||||||    
T  3071005 -gctatgcattggcattgaactgtgttaacaatatgaagagataatgtgacatgt 3070952  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 673 - 740
Target Start/End: Original strand, 3073292 - 3073359
Alignment:
Q  673 tggagcccgtcttttaataataatttcttaaagaaattgatttgaagaaactcttgaagactataaat 740  Q
    |||||||| || ||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||    
T  3073292 tggagcccatcatttaacaataatttatcaaagaaatggatttgaagaaactcttgaagactataaat 3073359  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 3071289 - 3071225
Alignment:
Q  250 tgttgctagactttcttcgaaagactgcaattatttcaaacaaaatatacaggactgttgaaatt 314  Q
    |||||||||||||| ||| ||||||||||||||||| |||||||| ||| |||||| ||||||||    
T  3071289 tgttgctagactttattcaaaagactgcaattatttaaaacaaaacatataggacttttgaaatt 3071225  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 627
Target Start/End: Original strand, 3073169 - 3073211
Alignment:
Q  585 ataaatcaagcattaagttaaacctagccatctcatttgactt 627  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  3073169 ataaatcaaacattaagtttaacctagccatctcatttgactt 3073211  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 673 - 740
Target Start/End: Original strand, 17970022 - 17970089
Alignment:
Q  673 tggagcccgtcttttaataataatttcttaaagaaattgatttgaagaaactcttgaagactataaat 740  Q
    |||||||| || ||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||    
T  17970022 tggagcccatcatttaacaataatttatcaaagaaatggatttgaagaaactcttgaagactataaat 17970089  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 627
Target Start/End: Original strand, 17969899 - 17969941
Alignment:
Q  585 ataaatcaagcattaagttaaacctagccatctcatttgactt 627  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  17969899 ataaatcaaacattaagtttaacctagccatctcatttgactt 17969941  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 791
Target Start/End: Original strand, 4249182 - 4249227
Alignment:
Q  746 actttgcttggcctagcggtataggcttgggatctgggagtgtgct 791  Q
    |||| ||||||||||| |||||||||||||||| | ||||||||||    
T  4249182 acttcgcttggcctagtggtataggcttgggattttggagtgtgct 4249227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 790
Target Start/End: Complemental strand, 27965574 - 27965537
Alignment:
Q  753 ttggcctagcggtataggcttgggatctgggagtgtgc 790  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  27965574 ttggcctagtggtattggcttgggatctgggagtgtgc 27965537  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 791
Target Start/End: Original strand, 2799867 - 2799912
Alignment:
Q  746 actttgcttggcctagcggtataggcttgggatctgggagtgtgct 791  Q
    |||| ||||||||||| |||||||||||| ||||||||||||||||    
T  2799867 acttcgcttggcctagtggtataggcttgagatctgggagtgtgct 2799912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 753 - 791
Target Start/End: Complemental strand, 8177246 - 8177208
Alignment:
Q  753 ttggcctagcggtataggcttgggatctgggagtgtgct 791  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  8177246 ttggcctagtggtattggcttgggatctgggagtgtgct 8177208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 753 - 791
Target Start/End: Complemental strand, 52336838 - 52336800
Alignment:
Q  753 ttggcctagcggtataggcttgggatctgggagtgtgct 791  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  52336838 ttggcctagtggtattggcttgggatctgggagtgtgct 52336800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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