View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_low_33 (Length: 206)
Name: NF11541_low_33
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 38056516 - 38056686
Alignment:
| Q |
16 |
aagaagaagtgaatcatggaagattttgattggaccgtgagaatttaattgttgaaatttatcaaatcatgtaaaatcaatcaattttccagaaacgcct |
115 |
Q |
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| T |
38056516 |
aagaagaagtgaatcatggaagattttgattggaccgtgagaatttgattgttgaaatttatcaaatcatataaaatcaatcaattttccagaaacgcct |
38056615 |
T |
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| Q |
116 |
aatataatttagttgaatcgctttccaatcctctatcataaacaaatcaattggtttaattaggatacctgg |
187 |
Q |
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| T |
38056616 |
aatataatttagttgaatcgcttt-caatcctctatcataaacaaatcaattggtttaattaggatacctgg |
38056686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 6476535 - 6476600
Alignment:
| Q |
121 |
aatttagttgaatcgctttccaatcctctatcataaacaaatcaattggtttaattaggatacctgg |
187 |
Q |
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| T |
6476535 |
aattaagttgaattgctt-ccactcctatatcataaacaactcaattggtttaattatggtacctgg |
6476600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 10554891 - 10554826
Alignment:
| Q |
121 |
aatttagttgaatcgctttccaatcctctatcataaacaaatcaattggtttaattaggatacctgg |
187 |
Q |
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| T |
10554891 |
aattaagttgaattgctt-ccactcctatatcataaacaactcaattggtttaattatggtacctgg |
10554826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 4939890 - 4939720
Alignment:
| Q |
16 |
aagaagaagtgaatcatggaagattttgattggaccgtgagaatttaattgttgaaatttatcaaatcatgtaaaatcaatcaattttccagaaacgcct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
4939890 |
aagaagaagtgaatcatggaagattttgattggaccgtgagaatttgattgttgaaatttatcaaatcatgtaaaatcaaacaattttccaaaaacgcct |
4939791 |
T |
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| Q |
116 |
aatataatttagttgaatcgctttccaatcctctatcataaacaaatcaattggtttaattaggatacctgg |
187 |
Q |
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| T |
4939790 |
aatagaatttagttgaatcgc-ttccaatcctctatcataaacaactcaattggtttaattaggatacctgg |
4939720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 19080730 - 19080665
Alignment:
| Q |
121 |
aatttagttgaatcgctttccaatcctctatcataaacaaatcaattggtttaattaggatacctgg |
187 |
Q |
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|||| |||||||| |||| ||| |||| |||||||||||| |||||||||||||||| | ||||||| |
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| T |
19080730 |
aattaagttgaattgctt-ccactcctatatcataaacaactcaattggtttaattatggtacctgg |
19080665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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