View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_low_6 (Length: 643)
Name: NF11541_low_6
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 633
Target Start/End: Complemental strand, 28553809 - 28553200
Alignment:
| Q |
18 |
gtttcattcaattccacaatgatagaatagaggcttatttatagccaagtacaagtattagatgcaaggcctaggttgcttgtattccaagtaatctgcc |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28553809 |
gtttcaatcaattccacaatgatagaatagaggcttatttatagccaagtacaagtattagatgcaaggcctaggttgcttgtattccaagtaatctgcc |
28553710 |
T |
|
| Q |
118 |
aagacttaagccaaaaactttactaatcatctaattagactacgtactaatatataacaatgcctcccctaataagaactccctaagcatggattcagat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
28553709 |
aagacttaagccaaaaactttactaatcatctaattagactacgtactaatatataacaatgcctcccctaatcagaactccc-----atggattcagat |
28553615 |
T |
|
| Q |
218 |
gatactattacacaatgttaatctacgctagatatgcatttgatgcctaactgtgaagctagttcaactgaacc-atgtaacgcacgtagagtcctacgc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28553614 |
tatactattacacaatgttaatctacgctagatatgcatt--atgcctaactgtgaagctagttcaactgaacccatgtaacgcacgtagagtcctacgc |
28553517 |
T |
|
| Q |
317 |
gacacgcaagcgtatactgaaatattctctataatttcaaaatttcatccggatgcaactgattatgaattttgaagacttaaaagacataagtcgcgat |
416 |
Q |
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||| ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28553516 |
gacgcgcaagcatatactgaaatattatctataatttcaaaatttcatccagatgcaactgattatgaattttgaagacttaaaagacataaggtgcgat |
28553417 |
T |
|
| Q |
417 |
ccctacgacctgaagtggcgattttcaacctttgtcaacaagattgaagattattgtcacactatttgcatgtattattcctttaaccttcgattatgta |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28553416 |
ccctacgacctgaagtggcgattttcaacctttgtcaacaagattgaagattattgtcacactatttgcatgtattattcctttaaccttcgattatgta |
28553317 |
T |
|
| Q |
517 |
ttttgttactattatgagtagctaaactcattagattatgattgaatgatgaacctctatgatactatttgaaaccatgcaatctactagttctccttaa |
616 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28553316 |
ttttgttactattatgagtagctaaactcattagattataattgaatgatgaacctctatgatactatttgaaaccatgcaatctactagttctccttaa |
28553217 |
T |
|
| Q |
617 |
ttcaatttgaacctatg |
633 |
Q |
| |
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||||||||||||||||| |
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| T |
28553216 |
ttcaatttgaacctatg |
28553200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 570
Target Start/End: Original strand, 31007988 - 31008133
Alignment:
| Q |
425 |
cctgaagtggcgattttcaacctttgtcaacaagattgaagattattgtcacactatttgcatgtattattcctttaaccttcgattatgtattttgtta |
524 |
Q |
| |
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|||||||||||| ||||||||| ||| |||||||||||||| | |||||| | ||||||||||| |||| |||| | || |||||||| || | |
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| T |
31007988 |
cctgaagtggcgtttttcaaccattggaaacaagattgaagagtggtgtcactatctttgcatgtatcattcttttatcttttgattatgttattgacca |
31008087 |
T |
|
| Q |
525 |
ctattatgagtagctaaactcattagattatgattgaatgatgaac |
570 |
Q |
| |
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||| ||| ||| |||||||| |||||||||||||||||||||||| |
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|
| T |
31008088 |
ttatcatgtgtaactaaactctttagattatgattgaatgatgaac |
31008133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 2661041 - 2660956
Alignment:
| Q |
67 |
tacaagtattagatgcaa-ggcctaggttgcttgtattccaagtaatctgccaagacttaagccaaaaactttactaatcatctaa |
151 |
Q |
| |
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|||||||||||||||||| ||||| | || || |||||||| |||||||| |||||||||||| |||| || ||||||||||||| |
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|
| T |
2661041 |
tacaagtattagatgcaaaggccttgattactcgtattccatgtaatctgtcaagacttaagctaaaactttcactaatcatctaa |
2660956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 542 - 595
Target Start/End: Complemental strand, 8355585 - 8355532
Alignment:
| Q |
542 |
actcattagattatgattgaatgatgaacctctatgatactatttgaaaccatg |
595 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||| |||| ||| |||||||| |
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|
| T |
8355585 |
actcattagattatgattgaataataaacatctatggtactgtttaaaaccatg |
8355532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 589
Target Start/End: Complemental strand, 31258888 - 31258807
Alignment:
| Q |
508 |
gattatgtattttgttactattatgagtagctaaactcattagattatgattgaatgatgaacctctatgatactatttgaa |
589 |
Q |
| |
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|||||||| ||| ||| ||| || ||||||||||||||||||||| |||| |||||||||| | ||||||| | |||||| |
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| T |
31258888 |
gattatgttgtttattaatatgataagtagctaaactcattagatttagatttaatgatgaacttgtatgatattgtttgaa |
31258807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 588
Target Start/End: Complemental strand, 29636566 - 29636502
Alignment:
| Q |
524 |
actattatgagtagctaaactcattagattatgattgaatgatgaacctctatgatactatttga |
588 |
Q |
| |
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||||| ||||| | ||||||||||||| ||| ||||||||||||||| |||||| |||||||||| |
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|
| T |
29636566 |
actatcatgagcacctaaactcattaggttaggattgaatgatgaacatctatggtactatttga |
29636502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 553
Target Start/End: Complemental strand, 52256676 - 52256612
Alignment:
| Q |
486 |
atgtattattcctttaaccttcgattatgtattttgttactattatgagtagctaaactcattagatt |
553 |
Q |
| |
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||||||| ||| || |||||| |||||||| || |||||||||||||||||||||||| ||||||| |
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|
| T |
52256676 |
atgtattgttctttaaacctttgattatgt---ttattactattatgagtagctaaactcgttagatt |
52256612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 570
Target Start/End: Original strand, 26511771 - 26511811
Alignment:
| Q |
530 |
atgagtagctaaactcattagattatgattgaatgatgaac |
570 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||| ||||| |
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|
| T |
26511771 |
atgagtagttaaactcattagatcatgattgaatggtgaac |
26511811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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