View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11541_low_8 (Length: 525)
Name: NF11541_low_8
Description: NF11541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11541_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 340 - 509
Target Start/End: Complemental strand, 26845755 - 26845586
Alignment:
| Q |
340 |
ctcgcccaacaccagaaactatagattctccaagaacttggctgggctttcacttctagcgtggaagaaagggcaacgagttctactgcttacccaactt |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26845755 |
ctcgcccaacaccagaaactatagattctccaagaacttggctgggctttcacttctagcgtggaagaaagggcaacgagttctactgcttacccaactt |
26845656 |
T |
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| Q |
440 |
tgtgacatagcgatagcggataaaggaagtctaagagttccaccgcccttacttaagggtaaggcagaag |
509 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26845655 |
tgtgacatagcgatagcggataaaggaagtataagagttccaccgcccttacttaagggtaaggcagaag |
26845586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 385 - 509
Target Start/End: Complemental strand, 7626640 - 7626516
Alignment:
| Q |
385 |
gctttcacttctagcgtggaagaaagggcaacgagttctactgcttacccaactttgtgacatagcgatagcggataaaggaagtctaagagttccaccg |
484 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7626640 |
gctttcactactagcgtggaagaaagggcaatgagttctactgcttacccaactttgtgacatagcgatagcggataaaggaagtttaagagttccaccg |
7626541 |
T |
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| Q |
485 |
cccttacttaagggtaaggcagaag |
509 |
Q |
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| T |
7626540 |
cccttacgtaagggtcaggcagaag |
7626516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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