View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11542_low_1 (Length: 352)
Name: NF11542_low_1
Description: NF11542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11542_low_1 |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 816 - 538
Alignment:
| Q |
1 |
tgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
816 |
tgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattg |
717 |
T |
|
| Q |
101 |
tgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
716 |
tgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttga |
617 |
T |
|
| Q |
201 |
gatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
282 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
616 |
gatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 8469 - 8191
Alignment:
| Q |
1 |
tgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8469 |
tgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattg |
8370 |
T |
|
| Q |
101 |
tgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttga |
200 |
Q |
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| T |
8369 |
tgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttga |
8270 |
T |
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| Q |
201 |
gatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
282 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8269 |
gatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
8191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 554 - 500
Alignment:
| Q |
293 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
347 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
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| T |
554 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 8207 - 8153
Alignment:
| Q |
293 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
347 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
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| T |
8207 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
8153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 6506791 - 6506513
Alignment:
| Q |
1 |
tgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6506791 |
tgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattg |
6506692 |
T |
|
| Q |
101 |
tgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6506691 |
tgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttga |
6506592 |
T |
|
| Q |
201 |
gatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatcatcaccatcaccaacacc |
282 |
Q |
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| T |
6506591 |
gatatgaaaccaattcacttttctatcaacaaactcaagattcaccttcatcat---cgtcatcatcaccatcaccaacacc |
6506513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 6521938 - 6522161
Alignment:
| Q |
1 |
tgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||| ||||||| |
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| T |
6521938 |
tgaccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacatta |
6522037 |
T |
|
| Q |
101 |
tgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttga |
200 |
Q |
| |
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|||||||| ||||||| | |||||||||||||||| ||||||||||| |||||| ||| |||||| |||| || |||||||||||||| |||||| |
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| T |
6522038 |
tgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaata-----ggt-taggtgctagaattgttagacccagttgtaatttga |
6522131 |
T |
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| Q |
201 |
gatatgaaaccaattcacttttctatcaac |
230 |
Q |
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|
||||||||||||||||| | |||||||||| |
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| T |
6522132 |
gatatgaaaccaattcattcttctatcaac |
6522161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 6512698 - 6512451
Alignment:
| Q |
1 |
tgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattg |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||||| | |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||| |
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| T |
6512698 |
tgaccttaaatatgctgttggaagtgatgaggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcattg |
6512599 |
T |
|
| Q |
101 |
tgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttga |
200 |
Q |
| |
|
|| ||||| ||||||| ||||||||||||| |||||||| |||||| |||| || || |||| |||| || ||||||| ||||||||||||| |
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| T |
6512598 |
tgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttg------ggtgctagaattgttagaccaagttgttatttga |
6512505 |
T |
|
| Q |
201 |
gatatgaaaccaattcacttttctatcaacaaacacaagattcaccttcatcat |
254 |
Q |
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||||||||||| ||||||| |||||||||||||||| |||| |||| ||||||| |
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| T |
6512504 |
gatatgaaaccgattcactcttctatcaacaaacaccagatccaccctcatcat |
6512451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 6517097 - 6516855
Alignment:
| Q |
1 |
tgaccttaaatatgctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||| | ||||||| |
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| T |
6517097 |
tgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtttaaaacattt |
6516998 |
T |
|
| Q |
101 |
tgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttga |
200 |
Q |
| |
|
|||||||| ||||||| | |||||||||| |||||| ||| |||||| |||| || ||| ||| |||| || ||||||||||||||||||||| |
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| T |
6516997 |
tgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatg------agtgctagagttgttagacccagttgttatttga |
6516904 |
T |
|
| Q |
201 |
gatatgaaaccaattcacttttctatcaacaaacacaagattcaccttc |
249 |
Q |
| |
|
||||||||||| ||||||| || ||||||| |||||||||||||||||| |
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|
| T |
6516903 |
gatatgaaaccgattcactcttttatcaaccaacacaagattcaccttc |
6516855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 6506529 - 6506475
Alignment:
| Q |
293 |
tcaccatcaccaacaccttccccaacatcagtgccatcattctctgctcctcctc |
347 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6506529 |
tcaccatcaccaacaccttcaccagcatcagtgccatcattctcagctcctcctc |
6506475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 47759955 - 47759914
Alignment:
| Q |
49 |
tcaaaccatatttgctcttgttcaatgcacacctgatttgtc |
90 |
Q |
| |
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||||||||||| || ||||||||| ||||||||||||||||| |
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| T |
47759955 |
tcaaaccatatatggtcttgttcagtgcacacctgatttgtc |
47759914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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