View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_high_11 (Length: 432)
Name: NF11543_high_11
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 154 - 424
Target Start/End: Original strand, 34028899 - 34029169
Alignment:
| Q |
154 |
ctctatatatcacacacatatttgaaagataagttatatcaaaatattgggtgcaggagttcgcggaaatattttctggatacccttcaacatttctcaa |
253 |
Q |
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| T |
34028899 |
ctctatatatcacacacatatttgaaagataagttatatcaaaatattgggtgcaggagttcgcggaaatattttctggatacccttcaacatttctcaa |
34028998 |
T |
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| Q |
254 |
aatcacattatactaaagacttgtaaatcaagtggattaagaaatatgaatgatatgacaaaaaatcattgctcgaagatcattacattagatttagagc |
353 |
Q |
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| T |
34028999 |
aatcacattatactaaagacttgtaaatcaagtggattaagaaatatgaatgatatgacaaaaaatcattgctcaaagatcattacattagatttagagc |
34029098 |
T |
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| Q |
354 |
aaccgtttaattgaacttagacgtaccatcttatgtcaaaatctttatatattagatctacgattcatctc |
424 |
Q |
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| T |
34029099 |
aaccgtttaattgaacttagacgtaccatcttatgtcaaaatctttatatattagatctacgattcatctc |
34029169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 34028192 - 34028262
Alignment:
| Q |
19 |
atattgaataatatatacaatggttaagattcactttatcaacttaagagacaaatttgtagccaatagac |
89 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34028192 |
atattgaataatatatacaatggttgagattcactttatcaacttaagagataaatttgtagccaatagac |
34028262 |
T |
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