View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_high_15 (Length: 399)
Name: NF11543_high_15
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 4999080 - 4999463
Alignment:
| Q |
1 |
gaacacataaacctgatacagaatctgagtttaagtcagagattgaaacattgggtagaattagacatgctaatatagtgaaactgttgttttgttgtag |
100 |
Q |
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| T |
4999080 |
gaacacataaacctgatacagaatctgagtttaagtcagagattgaaacattgggtagaattagacatgctaatatagtgaaactgttgttttgttgtag |
4999179 |
T |
|
| Q |
101 |
ttgtgatgatttcagaatattggtgtatgagtttatggaaaatgggagtttaggtgatgttttgcatgaggagaagtttgtggagttggattggtctaag |
200 |
Q |
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| T |
4999180 |
ttgtgatgatttcagaatattggtgtatgagtttatggaaaatgggagtttaggtgatgttttgcatgaggggaagtttgtggagttggattggtctaag |
4999279 |
T |
|
| Q |
201 |
agatttggaattgctttaggtgctgctaaagggttggcttatttacaccatgattgtgttcctgctattgttcatagggatgtgaagagtaataatatat |
300 |
Q |
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| T |
4999280 |
agatttggaattgctttaggtgctgctaaagggttggcttatttacaccatgattgtgttcctgctattgttcatagggatgtgaagagtaataacatat |
4999379 |
T |
|
| Q |
301 |
tgcttgatcatgattttgttcctcgtgttgctgattttggacttgctaagacattgcagcatgagggaaatgaaggtgctatgt |
384 |
Q |
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| T |
4999380 |
tgcttgatcatgattttgttcctcgtgttgctgattttggacttgctaagacattgcagcatgagggaaatgaaggtgctatgt |
4999463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 26735977 - 26736056
Alignment:
| Q |
271 |
ttcatagggatgtgaagagtaataatatattgcttgatcatgattttgttcctcgtgttgctgattttggacttgctaag |
350 |
Q |
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| T |
26735977 |
ttcatagggatgttaagtctaataatatattgcttgatgctgattttgaggctcatgttgctgattttggacttgctaag |
26736056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 21468521 - 21468560
Alignment:
| Q |
235 |
tggcttatttacaccatgattgtgttcctgctattgttca |
274 |
Q |
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| T |
21468521 |
tggcttatttacaccatgattgtgctcctcctattgttca |
21468560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 38868291 - 38868357
Alignment:
| Q |
238 |
cttatttacaccatgattgtgttcctgctattgttcatagggatgtgaagagtaataatatattgct |
304 |
Q |
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||||||| ||||||||||||||| | ||||||||||||||||||| || || |||||||||||| |
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| T |
38868291 |
cttatttgcaccatgattgtgttgttcctattgttcatagggatgtaaaatctagtaatatattgct |
38868357 |
T |
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