View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_high_19 (Length: 351)
Name: NF11543_high_19
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_high_19 |
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| [»] chr7 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 172 - 351
Target Start/End: Original strand, 36718377 - 36718556
Alignment:
| Q |
172 |
tcatatcccacatttattattagcctataacaaggggattacaaaattacaacatcaacctaagtctctcttactttctctaactttgtcctatcttatt |
271 |
Q |
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| T |
36718377 |
tcatatcccacatttattattagcctataacaaggggattacaaaattacaacatcaacgtaagtctctcttactttctctaactttgtcctaccttatt |
36718476 |
T |
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| Q |
272 |
ccatttcctgtcaaccatttttcacaaaatggaaaaatagctactgaagaataaaaggaagccaaaaacatcacattaac |
351 |
Q |
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| T |
36718477 |
ctatttcctgtcaacaatttttcacaaaatggaaaaatagctactgaagaataaaaggaagcaaaaaacataacattaac |
36718556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 36718146 - 36718232
Alignment:
| Q |
1 |
aagtgtatgtctggttttaaaaattgattttgaatgaaggtagaattatttgtgttaggatggatacattataataatgagttcaac |
87 |
Q |
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| T |
36718146 |
aagtgtatgtttggttttaaaaattgattttgaatgaaggtagaattatttgtgttaggatggatacattataataatgagttcaac |
36718232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 36718289 - 36718328
Alignment:
| Q |
83 |
tcaaccaatgaaatccattcaattagacgcattcatcacct |
123 |
Q |
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| T |
36718289 |
tcaaccaataaaatccattcaattagacgca-tcatcacct |
36718328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 216 - 351
Target Start/End: Complemental strand, 35414204 - 35414070
Alignment:
| Q |
216 |
aattacaacatcaacctaagtctctcttactttctctaactttgtcctatcttattccatttcctgtcaaccatttttcacaaaatggaaaaatagctac |
315 |
Q |
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| T |
35414204 |
aattacaacatcaacctaagtctctcttactttctctaactttatcctacctttttctgtttcctatcaacaatgtttcacaagatggaaaaatagctac |
35414105 |
T |
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| Q |
316 |
tgaagaataaaaggaagccaaaaacatcacattaac |
351 |
Q |
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| T |
35414104 |
t-aagaataaaaggaagcaaaaaacataatattaac |
35414070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 27178640 - 27178690
Alignment:
| Q |
174 |
atatcccacatttattattagcctataacaaggggattacaaaattacaac |
224 |
Q |
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| T |
27178640 |
atatcccacatttattattagcctaaaactaggggattacaaaattacaac |
27178690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 13618607 - 13618656
Alignment:
| Q |
283 |
caaccatttttcacaaaatggaaaaatagctactgaagaataaaaggaag |
332 |
Q |
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| T |
13618607 |
caacaattcttcacaaaatggaaaaatagctagggaagaataaaaggaag |
13618656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 49250682 - 49250649
Alignment:
| Q |
209 |
attacaaaattacaacatcaacctaagtctctct |
242 |
Q |
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| T |
49250682 |
attacaaaattacaacaacaacctaagtctctct |
49250649 |
T |
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