View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_high_24 (Length: 289)
Name: NF11543_high_24
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 1109403 - 1109127
Alignment:
| Q |
12 |
catttatttttattcaatgatgcataatcattttagaccaatgataaatacatacgtagtgtgaaccaaatannnnnnncaaaacaaataaaatacacaa |
111 |
Q |
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| T |
1109403 |
cattcatttttattcaatgatgcataatcattttagaccaatgataaatacatacttggtgtgaaccaaatatttttt-caaaacaaataaaatacacaa |
1109305 |
T |
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| Q |
112 |
aaatcattttatatactccaaataatgtatagataatcgttttagaacaacaataagtacatactcatttccatgaagtaaatttacatggtgggggaca |
211 |
Q |
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| T |
1109304 |
aaatcattttatatactccaaataatgcatagataatcgttttagaacaacaataagtacatactcatttccatgaagtaaatttacat-gtgggggaca |
1109206 |
T |
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| Q |
212 |
aagtttcccttgcaaaatctcattccataaaagaagatt-nnnnnnncacggtgaattcaaataagggcaaataccccc |
289 |
Q |
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| T |
1109205 |
aagtttcccttgcaaaatctcattccataaaagaagattaaaaaaaacacggtgaattcaaataagggcaaataccccc |
1109127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 27449319 - 27449422
Alignment:
| Q |
101 |
aaaatacacaaaaatcattttatatactccaaataatgtatagataatcgttttagaacaacaataagtacatactcatttccatgaagtaaatttacat |
200 |
Q |
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| T |
27449319 |
aaaatacacaacaatcatattatatactcaaaataatgcatagataa-cattttagaccaacgataaatacatactcattttcatgaagtaaggttagat |
27449417 |
T |
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| Q |
201 |
ggtgg |
205 |
Q |
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| T |
27449418 |
ggtgg |
27449422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 27449101 - 27449174
Alignment:
| Q |
35 |
ataatcattttagaccaatgataaatacatacgtagtgtgaaccaaatannnnnnncaaaacaaataaaataca |
108 |
Q |
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| T |
27449101 |
ataatcattttagaccaacaatgtatacatacttagtgtgaaccaaataatttgttcaaaacaaataaaataca |
27449174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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