View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_high_25 (Length: 287)
Name: NF11543_high_25
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 45082574 - 45082318
Alignment:
| Q |
12 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082574 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgt |
45082475 |
T |
|
| Q |
112 |
tttggatgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082474 |
tttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaa |
45082375 |
T |
|
| Q |
212 |
gaatgtgactattgcaggcaaacttgaaggaatttcgaacgacccttttactggaat |
268 |
Q |
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||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |
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| T |
45082374 |
gaatgtgactattgcgggcaaagttgaaggaatttctaacgacccttttactggaat |
45082318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 45078279 - 45078022
Alignment:
| Q |
11 |
cacagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtg |
110 |
Q |
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||||||||| ||| |||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
45078279 |
cacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatacaatgaaatatgtg |
45078180 |
T |
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| Q |
111 |
ttttggatgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgcta |
210 |
Q |
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| T |
45078179 |
ttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgcta |
45078080 |
T |
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| Q |
211 |
agaatgtgactattgcaggcaaacttgaaggaatttcgaacgacccttttactggaat |
268 |
Q |
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| T |
45078079 |
agaatgtgactattgcgggcaaacttgaaggaatttctaacgacccttttactggaat |
45078022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 45075048 - 45074791
Alignment:
| Q |
12 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgt |
111 |
Q |
| |
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|||||||| |||||||| |||||| | ||| |||||||||| || | |||||||||||||||||||||||||||| ||||| | ||| |||||||||| | |
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| T |
45075048 |
acagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttt |
45074949 |
T |
|
| Q |
112 |
tttggatgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaa |
211 |
Q |
| |
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||||||||||||| |||||| || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || || || |
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| T |
45074948 |
tttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaattatagagatgttactgccaa |
45074849 |
T |
|
| Q |
212 |
gaatgtgactattgcaggcaaacttgaaggaatttcgaacgacccttttactggaatt |
269 |
Q |
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||||||||||||||||||||||||||| |||||||| || |||||||||||||||||| |
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| T |
45074848 |
gaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatt |
45074791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 45067489 - 45067241
Alignment:
| Q |
11 |
cacagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtg |
110 |
Q |
| |
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|||||||||||||||||| |||||| | ||||| |||||||| || | ||||||||| || || |||||||||||| ||||||| ||| |||||||||| |
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| T |
45067489 |
cacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgtt |
45067390 |
T |
|
| Q |
111 |
ttttggatgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgcta |
210 |
Q |
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|||||||||||||| ||||| || |||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| | | |||| |
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| T |
45067389 |
ttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatattattgcta |
45067290 |
T |
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| Q |
211 |
agaatgtgactattgcaggcaaacttgaaggaatttcgaacgacccttt |
259 |
Q |
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|||||||||| |||||||| ||||||| |||||||| || |||||||| |
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| T |
45067289 |
agaatgtgacaattgcaggacaacttgacggaatttctaatgacccttt |
45067241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 34504823 - 34504570
Alignment:
| Q |
12 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaataca---ttgaaatatg |
108 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| | | ||||||||||||||||||||||||| || | ||||| ||| |||| ||||| |
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| T |
34504823 |
acagaatcagctgttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattgagatatg |
34504724 |
T |
|
| Q |
109 |
tgttttggatgacaggttcttatggagatcatcctgataagggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgc |
208 |
Q |
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|||||||| ||||||| ||||||||||| || |||||||| |||||||||||||| |||||||||||||||| |||||| | || ||||||||| | || |
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| T |
34504723 |
tgttttggttgacagggtcttatggagaccaccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatgttattgc |
34504624 |
T |
|
| Q |
209 |
taagaatgtgactattgcaggcaaacttgaaggaatttcgaacgacccttttac |
262 |
Q |
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|||||||||||| |||| || |||||||||||||||| || || |||||||| |
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| T |
34504623 |
taagaatgtgaccgttgcggggcaacttgaaggaatttctaatgatccttttac |
34504570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 17584522 - 17584404
Alignment:
| Q |
16 |
aatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttg |
115 |
Q |
| |
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|||||||| |||| |||||| |||| || |||||||| || | |||||| | || ||||| | ||||||| | ||||| ||| |||||||||||||||| |
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| T |
17584522 |
aatcagctattagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaacaatgaaatatgtgttttg |
17584423 |
T |
|
| Q |
116 |
gatgacaggttcttatgga |
134 |
Q |
| |
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|||||||||||| |||||| |
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| T |
17584422 |
gatgacaggttcatatgga |
17584404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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