View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_high_34 (Length: 242)
Name: NF11543_high_34
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6483637 - 6483415
Alignment:
| Q |
1 |
ttgaatcttgatctaggtagtgaaatgtgacaggatgagaggaactgtgttaaatgtgatggaatcggtgttggagttatcatcttagtgtttgtaagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6483637 |
ttgaatcttgatctaggtagtgaaatgtgacaggatgagaggaactttgttaaatgtgatggaatctgtgttggagttatcatcttagtgtttgtaagtg |
6483538 |
T |
|
| Q |
101 |
aaaaatgtgtgaattgatggtggcaaagatagagacagtcgtgacaagctgcggattggaccgtaaaatacagatttaagggtggggttctcacacgtgt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6483537 |
aaaaatgtgtgaattgatggtggcaaagatagagacagtcgtgacaagctgcggattggaccgaaaaatacagatttaagggtggggttctcacacgtgt |
6483438 |
T |
|
| Q |
201 |
cggggcacgtgtggcggcagctc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6483437 |
cggggcacgtgtggcggcagctc |
6483415 |
T |
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