View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_high_39 (Length: 227)
Name: NF11543_high_39
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_high_39 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 3 - 227
Target Start/End: Complemental strand, 6484186 - 6483948
Alignment:
| Q |
3 |
ctatatttgtttaccaaatttgacctacatttgagggaaatagcaactcttcgatccactatcaatgagtttctaacaaagaaatacacaggttataagg |
102 |
Q |
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| T |
6484186 |
ctatatttgtttaccaaatttgacctacatttgagggaaatagcaactcttcgatccactgtcaatgagtttctaacaaagaaatacacaggttataggg |
6484087 |
T |
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| Q |
103 |
aattagctttcaacaagata--------------ctcatcaaaatgtttagaatgtttcccaacattctaccataaaagcactcaattttcagtatttga |
188 |
Q |
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| T |
6484086 |
aattagctttcaacaagatactcaatgatttttactcatcaaaatgtttagaatgtttcccaacattctaccataaaagcactcaattttcagtctttga |
6483987 |
T |
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| Q |
189 |
attcctaagaattccctcttttgatacaccctaggttcc |
227 |
Q |
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| T |
6483986 |
attcctaagaattccctcttttgatacaccctaggttcc |
6483948 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 38860380 - 38860482
Alignment:
| Q |
16 |
ccaaatttgacctacatttgagggaaatagcaactcttcgatccactatcaatgagtttctaacaaagaaatacacaggttataaggaattagctttcaa |
115 |
Q |
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| T |
38860380 |
ccaaatttgacctacaattgagggagagagcagctctccaatccactatcaaatagtttcttacaaagagatacaatagttataagaaattagccttcaa |
38860479 |
T |
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| Q |
116 |
caa |
118 |
Q |
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| T |
38860480 |
caa |
38860482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 4055813 - 4055854
Alignment:
| Q |
49 |
ctcttcgatccactatcaatgagtttctaacaaagaaataca |
90 |
Q |
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| T |
4055813 |
ctcttcaatccactatcaatgagtttcttacaaagagataca |
4055854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 13121884 - 13121828
Alignment:
| Q |
50 |
tcttcgatccactatcaatgagtttctaacaaagaaatacacaggttataaggaatta |
107 |
Q |
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| T |
13121884 |
tcttcaatccactatcaatgagtttct-acaaagagatacaaaggttacaagaaatta |
13121828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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