View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_high_5 (Length: 609)
Name: NF11543_high_5
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 574
Target Start/End: Complemental strand, 6829540 - 6828999
Alignment:
| Q |
12 |
tcatcaagaactactagtgccacttacgctcaatgagaatgtactacttggtagttatttttaaaaacggttacaaattggacttatatgacaatatggt |
111 |
Q |
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| T |
6829540 |
tcattaagaactactggtgccacatacgctcaatgagaatgtagtacttggtagttatttt-aaaaacggttacaaattggacttatatgacaatatggt |
6829442 |
T |
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| Q |
112 |
gagttcttcttattgaatgtcggtgtaaaacaaattaacaaatatagaaaacaattatatcatgtatcccaccatctttatcaagaatcggtcttgcagg |
211 |
Q |
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| T |
6829441 |
gagttctt---attgaatgtcggtgtaaaacaaat--------atagaaaacaattatatca---------ccgtctttagcaagaatcggtcttgcagg |
6829362 |
T |
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| Q |
212 |
ctgcagctaccaataccatagcaagaagacaatacagttgttcaaattcaactaactaatccattcaaaaatcatcaattaatatctactcttaactgtt |
311 |
Q |
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| T |
6829361 |
ctgcagctaccaataccatagcaagaagacaatacagttgttcaaattcaactaactaatccattaaaaaatcatcaattaatatctactcttaactgtt |
6829262 |
T |
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| Q |
312 |
gtttcatattgaattgaagcaaaaacatgcaaccatacaagataatctagaaatcagtagcaacattccaaaagacaataaaagacaaaatcagaactat |
411 |
Q |
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| T |
6829261 |
gtttcatattgaattgaagcaaaaacatgcaaccatacaagataatctagaaatcagtagcaacattccaaaagacaataaaagacaaaatcagaactat |
6829162 |
T |
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| Q |
412 |
gaggatgaagatatttctgacttgagataaattcgcataaagcctcggagacatttcattctatcctccacagcttgtatttgcgtatcaaggttgataa |
511 |
Q |
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| T |
6829161 |
gaggatgaagatatttctgacttgagataaattcgaataaagcctcggagacacttcattctatcctccacagcttgtatttgcgtatcaaggttgataa |
6829062 |
T |
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| Q |
512 |
atttgaaatcccctttgagagactgaacatttaccaaaacaccatccaacttagcaagtgcag |
574 |
Q |
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| T |
6829061 |
atttgaaatcccctttgagagactgaacatttaccaaaacaccatccaacttagcaagtgcag |
6828999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 314 - 484
Target Start/End: Original strand, 7341786 - 7341954
Alignment:
| Q |
314 |
ttcatattgaattgaagcaaaaacatgcaaccatacaagataatctagaaatcagtagcaacattccaaaagacaataaaagacaaaatcagaactatga |
413 |
Q |
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| T |
7341786 |
ttcagattaaattgaagcaaaaacaggctaccatataagataatctaataattagttgcaacatttcagaagagagtaaca--caaaatcagaactaaga |
7341883 |
T |
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| Q |
414 |
ggatgaagatatttctgacttgagataaattcgcataaagcctcggagacatttcattctatcctccacag |
484 |
Q |
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| T |
7341884 |
ggatgaagattttgctgagttgatataaatccgcatatagctttggagatacttcactctgtcttccacag |
7341954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 7353379 - 7353475
Alignment:
| Q |
288 |
aattaatatctactcttaactgttgtttcatattgaattgaagcaaaaacatgcaaccatacaagataatc-tagaaatcagtagcaacattccaaa |
383 |
Q |
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| T |
7353379 |
aattaatttgtactcataactgttgcttcatgttgaattgaagcaaaaagaagcaaccatattagataatcaaataaatcagttgcaacatttcaaa |
7353475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 491
Target Start/End: Original strand, 7291307 - 7291394
Alignment:
| Q |
404 |
agaactatgaggatgaagatatttctgacttgagataaattcgcataaagcctcggagacatttcattctatcctccacagcttgtat |
491 |
Q |
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| T |
7291307 |
agaactaagaggatgaagatgtttttgagttgagataaatttgcatacagtttcgacgacacttcactctatcctccatagtttgtat |
7291394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 481
Target Start/End: Original strand, 7353874 - 7353940
Alignment:
| Q |
415 |
gatgaagatatttctgacttgagataaattcgcataaagcctcggagacatttcattctatcctcca |
481 |
Q |
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| T |
7353874 |
gatgaagatgtttctcacttgagataaattcgtacaaagcttcgaaaacacttcattatatcctcca |
7353940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 484
Target Start/End: Original strand, 7298108 - 7298189
Alignment:
| Q |
403 |
cagaactatgaggatgaagatatttctgacttgagataaattcgcataaagcctcggagacatttcattctatcctccacag |
484 |
Q |
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| T |
7298108 |
cagaactaagaggatgaagatgttttttacttgagagaaatccgtataaagcctttgagacacttcactttatcctcaacag |
7298189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 13245611 - 13245660
Alignment:
| Q |
70 |
ttttaaaaacggttacaaattggacttatatgacaatatggtgagttctt |
119 |
Q |
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| T |
13245611 |
ttttaaaaacagttacaaattagactcagatgacaatatgatgagttctt |
13245660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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