View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_high_6 (Length: 604)
Name: NF11543_high_6
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 11 - 589
Target Start/End: Complemental strand, 51785880 - 51785307
Alignment:
| Q |
11 |
cataggtacataaaccttttactagaaatcacgtaaaccacaagacatgattgtgatgagatatttcagatcttgattaaataatttttagtcnnnnnnn |
110 |
Q |
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| T |
51785880 |
cataggtacataaaccttttactagaaatcacgtaaaccacaagacatgattgtgatgagatatttcagatcttgattaaataatttttagtcttttttt |
51785781 |
T |
|
| Q |
111 |
-agaagggtttaatgttactcttgtacatactcttatcatcaatatatgagttatatatgatcaatgatcaaacttgacatttgtctgcaaactggaaaa |
209 |
Q |
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| T |
51785780 |
cagaagggtttaatgttactcttgtacatactcttatcatcaatat--gagttatatatgatcaatgatcaaacttgacatttgtctgcaaactggaaaa |
51785683 |
T |
|
| Q |
210 |
aggcaagagattgattgtcaacattgtgatatataatccattattgaaattcaataattaatgccaacaaaagcatgtggtagatatggagagacaatga |
309 |
Q |
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| T |
51785682 |
aggcaagggattgattgtcaacattgtgatatataatccattattgaaattcaataattaatgccaacaaaagcatgtggtagatatggagagacaatga |
51785583 |
T |
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| Q |
310 |
atttggttgagctaaaatgtggaacaatgtctgctgccaaataataataatatgtagactctagaattgaactaaagacttgaagaagaataatagaacc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51785582 |
atttggttgagctaaaatgtggaacaatgtctgctgccaaataataataatatgtagactctagaattgaactgaagacttgaagaagaataatagaacc |
51785483 |
T |
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| Q |
410 |
aatgtggtttcgtctccgtgtacgtttgtccaagaaatgaaaaatcatatcatagggcattgacacgttgctcgaaatgtcattttctgaatttgaatca |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51785482 |
aatgtggtttcgtctccgtgtacgtttgtccaagaaatgaaaaatcatatcatagggcattgacacgttgctcgaaatgtcattttctgaatttgaatca |
51785383 |
T |
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| Q |
510 |
cattcctttcaacagtagtatgatcatgatgctcacatcaagtatcaatctcttttgtgtgtactgtaggttccaaatct |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
51785382 |
cattcctttcaacagtagtatgatcatgatgctcacatcaagtatcaatctctttt-tgtg---tgtaggttccaaatct |
51785307 |
T |
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