View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_high_9 (Length: 442)
Name: NF11543_high_9
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 21 - 385
Target Start/End: Complemental strand, 33718785 - 33718421
Alignment:
| Q |
21 |
tctaactattgactaaccaatatcaagcaatttgttgcttgtgataattactttcaaggctagcatcttttacatcatttcatgtgtatgtgaaattttg |
120 |
Q |
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| T |
33718785 |
tctaactattgactaatcaatgtcaagcaatttgttgcttgtgataattactttcaaggctagcatcttttacatcatttcatgtgtatgtgaaattttg |
33718686 |
T |
|
| Q |
121 |
tctactttgaagtcataacgctttatatagttacattatataggaagccttgccttttgtagcttaggatcttattcctcgcagcctttctgatatatta |
220 |
Q |
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| T |
33718685 |
tctactttgaagtcataacgctttatatagttacattatataggaagccttgccttttgtagcttaggatcttattcctcgcagcctttctgatatatta |
33718586 |
T |
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| Q |
221 |
gttgtgttcttgtcaacattgtaatctaggtctctttctcttgtttctgttattaaaagattgaaatgtgtaagataagttcttacgataatcttttcct |
320 |
Q |
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| T |
33718585 |
gttgtgttcttgtcaacattgtaatctaggtctctttctcttgtttctgttattaaaagattgaaatgtgtaagataagttcttacgataatcttttcct |
33718486 |
T |
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| Q |
321 |
cgagaacatttactataatgcgaagtgaacaaaggaagtgaatttagtaggttttggataccaat |
385 |
Q |
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| T |
33718485 |
cgagagcatttactataatgcgaagtgaacaaaggaagtgaatgtagtaggttttggataccaat |
33718421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 33718381 - 33718338
Alignment:
| Q |
389 |
gtacctgtatagagtttctttcttcctttctaccattttctctg |
432 |
Q |
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| T |
33718381 |
gtacctgtatagagtttctttcttcctttctaccattttctctg |
33718338 |
T |
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