View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_12 (Length: 439)
Name: NF11543_low_12
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 49542867 - 49542656
Alignment:
| Q |
22 |
atagcagcaagttgtgaaaaaggtcaaaacaaagtacatagataaaccttgaatagcaagaagaacgtgttcattcattgaatcaaacagttaatgtgca |
121 |
Q |
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| T |
49542867 |
atagcagcaaattgtgaaaaaggtcaaaacaaagtacatagataaaccttgaaaagcaagaagaacgtgttcattcattgaatcaaacagttaatgtgca |
49542768 |
T |
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| Q |
122 |
accgaagaagaagaagaaggtgaaattaccagttagcagagagaattgagagtaaaaaacagtgacaagagaaggcagtgtgacgccatcaccgggtgag |
221 |
Q |
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| T |
49542767 |
accgaagaagaagaagaaggtgaaattaccagttagcagagagaatt--gagtaaaaaacagtgacaagagaaggcagtgtgacgccatcaccgcgtgag |
49542670 |
T |
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| Q |
222 |
cacttctggctggc |
235 |
Q |
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| T |
49542669 |
cacttctggctggc |
49542656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 233 - 423
Target Start/End: Complemental strand, 49542615 - 49542426
Alignment:
| Q |
233 |
ggcatgaggagaaatcggtgatttataattttaactattgtacatgaaatagccagtcataatataatgtggcatgtggtcctcactgcaatttcatct- |
331 |
Q |
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| T |
49542615 |
ggcatgaggagaaattggtgatttataattttaactattgtacatgaaatagccagtcatagt-----gtggcatgtggtcctcattgcaatttcatcat |
49542521 |
T |
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| Q |
332 |
---ccccttgccatggccgccgaatccgaacaagactcacagctagatattcgttccatattgctcatttcctttgtcctcctcgacaatgtttt |
423 |
Q |
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| T |
49542520 |
ctcccccttgccatggccgccgaatccgaacaagactcacagctagatattcgttccatattgctcatttcctttctcctcctcgacaatgtttt |
49542426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 47608215 - 47608047
Alignment:
| Q |
9 |
agcagagaagtctatagcagcaagttgtgaaaaaggtcaaaacaaagtacatagataaaccttgaatagcaagaagaacgtgttcattcattgaatcaaa |
108 |
Q |
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| T |
47608215 |
agcagagaaatctgtagcagcaggttgtgaaaaaggtgagaacaaagtacatagataaaccttgaaaagcaagaagaacgtgttaattcgttgaatcaaa |
47608116 |
T |
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| Q |
109 |
cagttaatgtgcaaccgaagaagaagaagaaggtgaaattaccagttagcagagagaattgagagtaaaaaa |
180 |
Q |
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| T |
47608115 |
tagttaatgtgcaacggaagaagaa---gaaggtgaaattaccatttagcatagagaattgagcgaaaaaaa |
47608047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 40918717 - 40918643
Alignment:
| Q |
344 |
gccgccgaatccgaacaagactcacagctagatattcgttccatattgctcatttcctttgtcctcctcgacaatgttt |
422 |
Q |
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| T |
40918717 |
gccgcccaatccgaacaag-ctcacggctagatattcgttccatattgctcttttccttt---ctcctcgacaatgttt |
40918643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 52894385 - 52894426
Alignment:
| Q |
93 |
cattcattgaatcaaacagttaatgtgcaaccgaagaagaag |
134 |
Q |
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| T |
52894385 |
cattcatttaatcaaacagtttatgtgcaaccgaagaagaag |
52894426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 422
Target Start/End: Original strand, 2882883 - 2882931
Alignment:
| Q |
371 |
ctagatattcgttccatattgctcatttcctttgtcctcctcgacaatgttt |
422 |
Q |
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| T |
2882883 |
ctagatattcgttccatattgctattttccttt---ctcctcgacaatgttt |
2882931 |
T |
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