View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_14 (Length: 423)
Name: NF11543_low_14
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 34596149 - 34596564
Alignment:
| Q |
1 |
aaaagatatttgttactgctgtttagtctgttgctatatgttaggaattatgttattgctgtctttatttgtcctagtctttaggaagcagtttcacatt |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
34596149 |
aaaagatatttgttactgccgtt-agtctgtttctatatgttaggaattatgttattgttgtctttatttgtcctagtctttaggaagtagtttcacatt |
34596247 |
T |
|
| Q |
101 |
tcattcagtcgtgtgagtattgttttagtgggctattttatagcttttcagtttccaattgttttgactatttaatagtctatgtttaatcaataaagct |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
34596248 |
tcattcagtcgtttgagtattgttttagtgggccattttatagcttttcagtttctagttgttttgactatttaatagtctatattttatcaataaagca |
34596347 |
T |
|
| Q |
201 |
gaagttttgagtttcatattccatatctctacaaactggtatcagagcccccactgggcctgataaaaatatctaagccgcagcttagctaagaaaaaga |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
34596348 |
gcagttttgagtttcatattccatatctctacaaactggtatcagagcccccactgggcctgataaaaataactaagccgtagcttagctaagaaaaaga |
34596447 |
T |
|
| Q |
301 |
gagaaacacaaaaatgagtgacacaaagctttcagcaaaaattccccattttgatggtcttcactatgatcattggagtgagttgatggagaatcttctt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34596448 |
gagaaacacaaaaatgagtgacacaaagctttcagcaaaaattcctcattttgatggtcttcactatgatcattggagtgagttgatggagaatcttctt |
34596547 |
T |
|
| Q |
401 |
cgtgccaacggtctctg |
417 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
34596548 |
cgtgccaaaggtctctg |
34596564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 34600426 - 34600659
Alignment:
| Q |
1 |
aaaagatatttgttactgctgtttagtctgttgctatatgttaggaattatgttattgctgtctttatttgtcctagtctttaggaagcagtttcacatt |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
34600426 |
aaaagatatttgttactgccgtt-agtctgtttctatatgttaggaattatgttattgttgtctttatttgtcctagtctttaggaagtagtttcacatt |
34600524 |
T |
|
| Q |
101 |
tcattcagtcgtgtgagtattgttttagtgggctattttatagcttttcagtttccaattgttttgactatttaatagtctatgtttaatcaataaagct |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
34600525 |
tcattcagtcgtttgagtattgttttagtgggccattttatagcttttcagtttctagttgttttgactatttaatagtctatattttatcaataaagca |
34600624 |
T |
|
| Q |
201 |
gaagttttgagtttcatattccatatctctacaaa |
235 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||| |
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|
| T |
34600625 |
gcagttttgagttttatattccatatctctacaaa |
34600659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 57 - 414
Target Start/End: Original strand, 1185032 - 1185390
Alignment:
| Q |
57 |
tgctgtctttatttgtcctagtctttaggaa-gcagtttcacatttcattcagtcgtgtgagtattgttttagtgggctattttatagcttttcagtttc |
155 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||| | |||||||||||| ||| | |||||| ||||| |||||||||||||||||||||||||| || |
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|
| T |
1185032 |
tgctatcttcatttgtcatagtctttaggaaagtagtttcacatttaattaa-tcgtgtcagtatacctttagtgggctattttatagcttttcttgttg |
1185130 |
T |
|
| Q |
156 |
caattgttttgactatttaatagtctatgtttaatcaataaagctgaagttttgagtttc----atattccatatctctacaaactggtatcagagcccc |
251 |
Q |
| |
|
| |||||||||||| ||||||||||| || || ||||| | | ||||| ||||| |||||| ||||||||||||||| ||||||||||||| |
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|
| T |
1185131 |
tagttgttttgactacttaatagtctaatttctatgaataa-gtagcagtttc-agtttttaagatattctatatctctacaaactagtatcagagcccc |
1185228 |
T |
|
| Q |
252 |
cactgggcctgataaaaatatctaagccgcagcttagctaagaaaaagagagaaacacaaaaatgagtgacacaaagctttcagcaaaaattccccattt |
351 |
Q |
| |
|
|| ||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| |
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|
| T |
1185229 |
catagggcctgataaaa-taactaagccgtagcttagctaagaaacagagagaaacacaaaaatgagtgacacaaagtttttagcaaaaattcctcattt |
1185327 |
T |
|
| Q |
352 |
tgatggtcttcactatgatcattggagtgagttgatggagaatcttcttcgtgccaacggtct |
414 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
1185328 |
tgatggtctccactacgatcattggaatgagttgatggagaatcttcttcgtgccaaaggtct |
1185390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 36479741 - 36479588
Alignment:
| Q |
30 |
gttgctatatgttaggaattatgttattgctgtctttatttgtcctagtctttaggaagcagtttcacatttcattcagtcgtgtgagtattgttttagt |
129 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||| || |||||||||||||||||||||| ||||| | || | | | ||||| ||||| |||||| |
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|
| T |
36479741 |
gttgctatttgttaggaattataatattgttgttttcatttgtcctagtctttaggaagtagttttttaatttaattaatcgtgccggtatttctttagt |
36479642 |
T |
|
| Q |
130 |
gggctattttatagcttttc-agtttccaattgttttgactatttaatagtcta |
182 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
36479641 |
gggctattttatagcttttcttgtttctagttgttttgactatttaatagtcta |
36479588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 37557482 - 37557510
Alignment:
| Q |
237 |
tggtatcagagcccccactgggcctgata |
265 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37557482 |
tggtatcagagcccccactgggcctgata |
37557510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 21469715 - 21469687
Alignment:
| Q |
237 |
tggtatcagagcccccactgggcctgata |
265 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21469715 |
tggtatcagagcccccactgggcctgata |
21469687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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