View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_15 (Length: 413)
Name: NF11543_low_15
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 401
Target Start/End: Original strand, 42454434 - 42454811
Alignment:
| Q |
22 |
aaggtatccttagtggtggt----gggaaagccgcggattgtgcctggtgttcggnnnnnnntagagggagagagagggtcatcttttttatactcgcaa |
117 |
Q |
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| T |
42454434 |
aaggtatccttagtggtggttggtgggaaagctgcggattgtgcgtggtgttcggaaaaaa-tagagggaga----gggtcatcttttttatactcgcaa |
42454528 |
T |
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| Q |
118 |
ttttacttctgttgtatatatggtatacaattttcaagtgggtgggaatggggtgattttttccagaacatactttctcttttcgattactttgtatcct |
217 |
Q |
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| T |
42454529 |
ttttacttctgttgtatatatggtatacaattttcaagtgggtgggaatggggtgatttttcccagaacatactttcccttttcgattactttgtatcct |
42454628 |
T |
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| Q |
218 |
cttccttcggtaagaaacattggaaatgcttaattcttatttgacacacaattgttttgaaaattttgtgacgcaagaaattccaaggatggaagaggtc |
317 |
Q |
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| T |
42454629 |
cctccttcggtaagaaacattggaaatgcttaattcttctttgacacacaatt-ctttgaaaaatttgtgacgcaagaaattccaaggatggaagaggtc |
42454727 |
T |
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| Q |
318 |
gttaagggtattatagttttcttttgaatgttgctttcagctaggaagaaaagataccttgtttgtattattagtggttattca |
401 |
Q |
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| T |
42454728 |
gttgagggtattatagttttcttttgaatgttgctttcagctaggaagaaaagataccttgtttgtattattactggttattca |
42454811 |
T |
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