View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_16 (Length: 401)
Name: NF11543_low_16
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 39809176 - 39808784
Alignment:
| Q |
1 |
cgctgcagccgccaccctttgctgctcttcaacggtggtagaagcgccaccaccggtggatagtatagcctcaaggtagccattaatccactcattacca |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809176 |
cgctgcagccgccaccctttgctgctcttcaacggtggtagaagcaccaccaccggtggatagtatagcctcaaggtagccattaatccactcattacca |
39809077 |
T |
|
| Q |
101 |
gccattaatctcaacctttctttgtattatatatgtagtgtaaaactactatacagtttacaatattcttaaactcaagtactcattctaatatgaagta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809076 |
gccattaatctcaacctttctttgtattatatatgtaatgtaaaactactatacagtttacaatattcttaaactcaagtactcattctaatatgaagta |
39808977 |
T |
|
| Q |
201 |
tgtttcttgaatgttacatgatcaacatggcttatctttatgtaatgttttgtgtgcagtgttagagaaccacatgcaatgaacgatgtatattgctcat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39808976 |
tgtttcttgaatgttacatgatcaacatggcttatctttatgtaatgttttgtgtgcagtgttagagaaccacatgcaatgaacgatgtatattgctcat |
39808877 |
T |
|
| Q |
301 |
ttttggttcaaatttgtgtgttgtgtattgtattgtcttttgtgttagttagttaggcaccgaatataattaacattattccttattcttctc |
393 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39808876 |
ttttggttcaaatttgtgtgttgtgtattgtgttgtcttttgtgttagttagttaggcaccgaatataattaacattattccttattcttctc |
39808784 |
T |
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