View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_18 (Length: 393)
Name: NF11543_low_18
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_18 |
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| [»] scaffold0054 (2 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 78 - 375
Target Start/End: Complemental strand, 38649 - 38352
Alignment:
| Q |
78 |
gttttcaaatgaaaagcatcatgatttgcaaatggattcaaaacgcttgaaagatttaagatgcagattggagaaggcaatatcatcatgtctatagctg |
177 |
Q |
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| T |
38649 |
gttttcgaataaaaaggatcatgatttgcaaatggattcaaaacgcttgaaagatttaagatgcagattggagaaggcaatatcatcatgtctatagctg |
38550 |
T |
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| Q |
178 |
ttgttcacctttttgtttgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatacagatagcgtgagtagggaatagg |
277 |
Q |
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| T |
38549 |
ttgttcacctttttgtttgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatacagatagcgtgagtagggaatagg |
38450 |
T |
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| Q |
278 |
gatggttctcgagctggtggtcgtggtttgtttagagtgagtaacagtgagtgcctttgttgttctggaaagctgttgtggacgtcaagtgcggtttt |
375 |
Q |
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| T |
38449 |
gatggttctcgagctggtggtcgtggtttgtttagagtgagtaacggtgagtgcctttgttgttttggaaagctcttgtggacgtcaagtgcggtttt |
38352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 42865 - 42686
Alignment:
| Q |
16 |
agaagaacagtagcggtgagaattgataatagattgttgcagaacatattaat-----gaagtattggttttcaaatgaaaagcatcatgatttgcaaa- |
109 |
Q |
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| T |
42865 |
agaagaaaagtagcagtgagaattgataatagattgttgcggaacatattaatataatgaagcatttgttttcgaataaaaatgatcatgattttcaaaa |
42766 |
T |
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| Q |
110 |
tggattcaaaacgcttgaaagatttaagatgcagattggagaaggcaatatcatcatgtctatagctgttgttcaccttt |
189 |
Q |
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| T |
42765 |
tggattcaaaaagcttgaaagatttaaaattcagattggagaaggcaatatcatcatgtatatagctgttgttcaccttt |
42686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 32958354 - 32958584
Alignment:
| Q |
29 |
cggtgagaattgataatagattgttgcagaacatattaatgaagtattggttttcaaatgaaa---agcatcatgatttgcaaatggattcaaaacgctt |
125 |
Q |
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| T |
32958354 |
cggtaagaattgacaagagattgttgcagaacatgttaatgaagtatatgttttcgaataaaattaagaaccatgatttgcaaacgaattcaaaacgcat |
32958453 |
T |
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| Q |
126 |
gaaagatttaagatgcagattggagaaggcaatatcatcatgtctata--gctgttgttcacctttttgtttgagagaatgaagttcagcggttgcagat |
223 |
Q |
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| T |
32958454 |
gaaagatttaagatgaagatcagagaaggcaatatcatcatatatatatagttgttgttcgccttttcttttgagagaatgaagttcagcggttgcagat |
32958553 |
T |
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| Q |
224 |
tggaatacgagtgaatgagattgttgaatac |
254 |
Q |
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| T |
32958554 |
tggaatacgagtgaatgagattgttgaatac |
32958584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 29136455 - 29136414
Alignment:
| Q |
97 |
catgatttgcaaatggattcaaaacgcttgaaagatttaaga |
138 |
Q |
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| T |
29136455 |
catgatttgcaaacgcattcaatacgcttgaaagatttaaga |
29136414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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