View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11543_low_19 (Length: 389)
Name: NF11543_low_19
Description: NF11543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11543_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 8287208 - 8287566
Alignment:
| Q |
20 |
agggttaatattttgagcggtaacagggaaaggtgaatcagaagccattgaagacaaagaacgaaggggagaaggatggtgatattgttggttttgattc |
119 |
Q |
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| T |
8287208 |
agggttaatattttgagcggtaacagggaaaggtgaatcagaagccattgaagacaaagaacgaaggggagaaggatggtgatattgttggttttgattc |
8287307 |
T |
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| Q |
120 |
cgaacaaagacaagcgaacggttgaaaagatgtctgaatctgtctgcagcggatttccgcattgtgtggtgtgcttgggtttatatattgtgagaaagat |
219 |
Q |
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| T |
8287308 |
cgaacaaagacaagcgaacggttgaaaagatgtctgaatctatctgcagcggatttccgcattgtgtggtgtgcttgggtttatatattgtgagaaagat |
8287407 |
T |
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| Q |
220 |
ggttttgttttttgatgcgaagttgaaaagtaacgtgggtgtgtgtgcgtctagaaactcttgtagcacaagaaaacaatacaacctatgaattgttgag |
319 |
Q |
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| T |
8287408 |
ggttttgttttttgatgcgaagttgaaaagtaacgtgggtgtgtgtgcgtctagaaactcttgtagcacaagaaaacaatacaacctatgaattgttgag |
8287507 |
T |
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| Q |
320 |
acgtatcaattgtccacgagcgcccacgtttttatgtcatagaatattgaattgttctt |
378 |
Q |
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| T |
8287508 |
acgtatcaattgtccacgagcgcccacgtttttatgtcatagaatattgaattgttctt |
8287566 |
T |
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